Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4319 ATGAGTGGCTTTAGTTTCAGAGGCTTCACATTGATGATTCTCACTGCGTTTCTTATCTGGTCTTTCAATTTTGAAGCCTGCATTGCAAGAAGAGGCAAGCATTGGAGGCAAAACAGAGGAGTCTCACCATCTCTCTACAAGAAGGGGAAGAGTCATGGCCATAACAATCACAATTACCATGGATCAAAAACCACTCctccatcaccatcaccatcacctTTACCACCTAATCCTATGCCTAACCCAAAGCAAGATAACCCTTTAATTCCAACTCCAACTCCACCTCCACCATACAATTATGGTGATGGCCATTCCACTGCAGTCTTTAATGTGCTTGATTTTGGAGCTAAGGGAGATGGAATTTCTGATGATACAAAGGCATTCCAAGACACATGGGCAGCTGCTTGCAAGGTAGAGGCATCAACCATGGTCGTCCCAGCAAATTATGTTTTCTACGTGGGACCCATTTCATTCTCTGGTCCATACTGTAAACCCAGCATAGTTTTTCAGCTTGATGGCACAATTATTGCTCCCACAGACCCCAAGGCTTGGGGAAATGGAATTTTACAGTGGCTGGAATTCTCAAAGCTAGTGGGAATCACCATTCAAGGAAAGGGTGTGATTGATGGAAGAGGCTCTGTTTGGTGGCAAGACTACCCATTTGATGATCCTATAGATGATGAAGAAAAACTCATTGTCCCTCTAAATCACACATTAGGGAGGCCCCCAATGCCGATACAAAGTGAGATGGGAAGAAGAATGCCAAGCATCAAGCCAACGGCACTGCGGTTCTATGGGAGTTTCAATCCAACGGTTACAGGAATAACAATTCAAAATAGTCAACAGTGCCACCTCAAGTTTGACAGCTGCAATGGAGTCTTGGTCCATGATGTCAACATTTCATCTCCAGGTGACAGCCCCAATACAGATGGAATTCACCTTCAGAACTCCAAAGATGTGCTCATTCACACCACCACTTTAGCTTGTGGAGATGATTGTATTTCCATACAAACTGGATGCTCAAATGTATATGTACATAACATCAATTGTGGGCCAGGGCATGGAATCAGCATTGGAAGTTTAGGAAGGGATAACACTAGAGCCTGCGTCTCAAACATTACAGTCAGAGACATCATCATGCATAACACAATGACTGGTGTCAGAATCAAAACATGGCAGGGTGGATCAGGCTCTGTGCAGGGGGTAATGTTCTCAAATATCCAAGTTTCTGAAGTCCAACTCCCAATTGTGATTGATCAATTCTATTGTGATAAGAGAACATGTCAAAACCAAACATCAGCCGTGGCTCTTGCAGGAATTAACTATGAAAGAATAAGGGGAACATTCACAGTTAAACCAGTGCATTTTGCCTGTAGTGATAGCCTACCATGTGTTGATGTTTCTTTAACCTCCATTGAGCTACAACCacttcaagaaaaataccaCCTATATAATCCTTTCTGCTGGCAGGCTTATGGTGAATTGAAAACTCCCACACTCCCACCAATTGATTGCCTACAGATTGGGAAGCCATCGAGCAATCGGATTCAGACCGaccatgatatatgttaa 1572 0.4198 MSGFSFRGFTLMILTAFLIWSFNFEACIARRGKHWRQNRGVSPSLYKKGKSHGHNNHNYHGSKTTPPSPSPSPLPPNPMPNPKQDNPLIPTPTPPPPYNYGDGHSTAVFNVLDFGAKGDGISDDTKAFQDTWAAACKVEASTMVVPANYVFYVGPISFSGPYCKPSIVFQLDGTIIAPTDPKAWGNGILQWLEFSKLVGITIQGKGVIDGRGSVWWQDYPFDDPIDDEEKLIVPLNHTLGRPPMPIQSEMGRRMPSIKPTALRFYGSFNPTVTGITIQNSQQCHLKFDSCNGVLVHDVNISSPGDSPNTDGIHLQNSKDVLIHTTTLACGDDCISIQTGCSNVYVHNINCGPGHGISIGSLGRDNTRACVSNITVRDIIMHNTMTGVRIKTWQGGSGSVQGVMFSNIQVSEVQLPIVIDQFYCDKRTCQNQTSAVALAGINYERIRGTFTVKPVHFACSDSLPCVDVSLTSIELQPLQEKYHLYNPFCWQAYGELKTPTLPPIDCLQIGKPSSNRIQTDHDIC 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4319 523 SUPERFAMILY Pectin lyase-like 104 521 IPR011050 -
Sto6g4319 523 Gene3D - 99 513 IPR012334 -
Sto6g4319 523 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 513 - -
Sto6g4319 523 Pfam Glycosyl hydrolases family 28 257 475 IPR000743 GO:0004650|GO:0005975
Sto6g4319 523 Pfam Glycosyl hydrolases family 28 138 218 IPR000743 GO:0004650|GO:0005975
Sto6g4319 523 MobiDBLite consensus disorder prediction 39 96 - -
Sto6g4319 523 PANTHER - 6 513 - -
Sto6g4319 523 MobiDBLite consensus disorder prediction 66 96 - -
Sto6g4319 523 ProSitePatterns Polygalacturonase active site. 347 360 IPR000743 GO:0004650|GO:0005975
Sto6g4319 523 SMART pbh1 317 338 IPR006626 -
Sto6g4319 523 SMART pbh1 370 391 IPR006626 -
Sto6g4319 523 SMART pbh1 340 360 IPR006626 -
Sto6g4319 523 SMART pbh1 290 316 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4319 Sto-Chr6 45925297 45929355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4319 4 523 Glycoside Hydrolase AT1G60590 65.421 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4319 - - gmx:732602 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4319 6 45925297 45929355 Sto6g4319 6 45925297 45929355 ECH