Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4306 ATGAAGAGAAGCACAAGTTGTTCTTTTCTACTATTTTTCATGTTCCTATTAATCTTTGATGTGTTTATCACCTCTTCTGTCATTACCGTGGAGGCAAGGAAGAATCACATGAAGAGGAGCAGGCCTCACAAACAACATCAGAAACATCATAGCAATGGCCATTCTCAAGGTTCACAATCTCCAAGTGCTTCCCAAATGGCCACTTTTGATGTTATGTCCTTCGGAGCCAAAGGCAATGGAGTTTCTGATGATTCAAAGGCACTTGTAGCAGCATGGGAAGCTGCCTGCAAAGTTGCTGGTGCTACAGTGAAAATTCCAGCACAACATAGGTTCCTAATCAACCCCATAACTTTACAAGGCCCTTGTATGCCTCACCTTACTCTTCAGaTAGATGGGACTGTATTGGCTCCTTCTGAAGCATCTTCCTGGCCAAAATCCAGTTTGTTTCAGTGGTTAAATTTCAAATTGCTCCATAACTTCACCATCCAAGGCTCTGGCACCATTGATGGCCAAGGATCTGATTGGTGGACCCCCTCACAAATTTATAATATGCAGAAAAGATTCTCCAAACAAATTCCAGGCATGAAACCAACTGCTATAAGATTGTATTCCAGTAACGTTGTAACAGTTCGTGACATAAGAATCATAAACAGTCCTCTGTGCCATTTAAAATTCGATAATTCAAAGGGGATCACTGTAAACAACATTACAATATCTTCCCCAGAAAATAGCCCAAACACCGACGGAATTCACTTGCAGAACTCACAGGATGTAGAGATTCTACATTCTCACATTGGAACTGgtgATGACTGTGTATCCATTCAGACCGGTTGCTCTAATATTCATATTCACCATATCAACTGTGGGCCAGGACATGGTATaagCTTGGGAGGATTAGGAAAAGATAGAAGTGTGGCATGTGTTTCAAACATCATGGTTAACGATGTGTGGATGCAAAATACTCTATATGGAGTGAGGATCAAAACATGGCAGGGGGGGAGTGGGACGGTAAAGAACGTGTCATTCTCAAGAATCCAAGTTGAAGATGTGAAGGTTCCAATAGTGATAGACCAATACTATTGCGACAAGCATGTGTGCAAGAACCAGACAGGAACGGTCGCGATTTGTGGAGTGAAGTTTGATGAAATACGTGGGAGTTATGCAGTTCAGCCCATACATGTTGCTTGTAGCAATTCCATACCATGCACTGACCTTCATCTAATTAATATTCAGCTTAGCCCCTCTCTTCATTACCGCGGTTTTCAGCAACCTCTCTGTTCCAACTCTTATGGCAACTCACAACCCCCATTGCTTCCTTCACCCATTCATTCTTGCCTCACAACTGCTCGCCCTTTTATCAAGAGGATATCTAGGTCTCATGACGCTCTATGCTAA 1395 0.4229 MKRSTSCSFLLFFMFLLIFDVFITSSVITVEARKNHMKRSRPHKQHQKHHSNGHSQGSQSPSASQMATFDVMSFGAKGNGVSDDSKALVAAWEAACKVAGATVKIPAQHRFLINPITLQGPCMPHLTLQIDGTVLAPSEASSWPKSSLFQWLNFKLLHNFTIQGSGTIDGQGSDWWTPSQIYNMQKRFSKQIPGMKPTAIRLYSSNVVTVRDIRIINSPLCHLKFDNSKGITVNNITISSPENSPNTDGIHLQNSQDVEILHSHIGTGDDCVSIQTGCSNIHIHHINCGPGHGISLGGLGKDRSVACVSNIMVNDVWMQNTLYGVRIKTWQGGSGTVKNVSFSRIQVEDVKVPIVIDQYYCDKHVCKNQTGTVAICGVKFDEIRGSYAVQPIHVACSNSIPCTDLHLINIQLSPSLHYRGFQQPLCSNSYGNSQPPLLPSPIHSCLTTARPFIKRISRSHDALC 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4306 464 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 26 452 - -
Sto6g4306 464 MobiDBLite consensus disorder prediction 36 51 - -
Sto6g4306 464 SMART pbh1 308 329 IPR006626 -
Sto6g4306 464 SMART pbh1 255 276 IPR006626 -
Sto6g4306 464 SMART pbh1 228 254 IPR006626 -
Sto6g4306 464 SMART pbh1 337 358 IPR006626 -
Sto6g4306 464 SMART pbh1 278 298 IPR006626 -
Sto6g4306 464 PANTHER - 26 452 - -
Sto6g4306 464 MobiDBLite consensus disorder prediction 34 62 - -
Sto6g4306 464 SUPERFAMILY Pectin lyase-like 64 443 IPR011050 -
Sto6g4306 464 Pfam Glycosyl hydrolases family 28 101 414 IPR000743 GO:0004650|GO:0005975
Sto6g4306 464 Gene3D - 52 450 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4306 Sto-Chr6 45823827 45826344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4306 8 464 Glycoside Hydrolase AT3G26610 59.227 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4306 K01213 - gmx:100803027 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4306 6 45823827 45826344 Sto6g4306 6 45823827 45826344 ECH