Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4240 ATGGCGTCTTTCGTAAACCCAACTCACTCTGTCCCTCCATCCCATAAGCCTCCAACTCCAATCCGTGCTTGCAGAAAACAGTTGTGTGTGAGATGTTCAGGTGAGGAGGAAAGGACGATGATAAGCAAAGAAAGAGAAGGGTGGAACATCAATTACTCTGCCCACAAACCGGCAACGCCATTGCTGGATACCGTCAATTATCCTCCTCATATCAAAAACCTCTCTTCTCAGGATCTTGAGCAACTCGCAGCAGAGCTCAGGGCAGATATAGTACACACTGTGTCAAAAACCGGTGGTCATCTCAGCTCAAGCTTAGGAGTAGTGGAACTATCGGTGGCTCTGCATCATGTTTTTAACACCCCACATGACAAAATTATATGGGATGCATACCCGCACAAAATCCTCACAGGTCGAAGGCACAAGATGCACAGCATTAGGAAAACTTGTGGGCTGGCTGGGTTTCCTAAAAGGGAAGAAAGCGTTTATGACGCTTTTGGGGCAGGGCATAGTTCTACCAGTATATCTGCCGCCCTTGGGATGGCGGTTGGAAGGGATCTATTGGGAAAGAAAAACAAGGTGATTTCGGTGATTGGGGACGGAGCAATGACGGGTGGTCAAGCTTACGAAGGCATGAACAACGCAGGATTTCTTGACTCTAACCTCATTATTATTCTTAATGACAATCGACAAGTCTCCCTCCCAACTGCTACCCTTGACGGCCCCGCAACCCCAGTTGGAGCACTCAGTACTGCTTTAACCAATATTCAAGCAAGCGCTCAATTCCGCAAGCTCAGAGAGGCTGCAAAAACCATCACTAAACAAATTGGAGGGCAAACTCACCAAGTTGCAGCAAAAGTAGATGAGTATGCAAGAGGTCTCATCAGCGCTTCTGGCTCTACATTTTTTGAGGAGCTTGGGTTGTACTACATTGGACCAGTGGATGGTCATAACGTGCAAGACCTGGTCACTATTTTGCAAAAAGTGAAGGCAATGCCCGCACCAGGTCCTGTTTTGATTCACGTTGTGacagagaaaggaaaaggataTGCCCCCGCAGAAGCAGCAGCTGATAAAATGCACGGTGTTGTCAAGTTTGACCCCAAAACAGGCACACAATTAAAGCCACAATCTGCAACACTTAGCTATACCCAATACTTTGCTGAGTCCTTGATAAAGGAAGCCGAACAAGACAACAAGATAGTAGCCATTCATGCAGCAATGGGTGGTGGGACAGGTTTAAATTATTTTCAGAAAAGGTTTCCAGATCGCTGCTTTGATGTAGGAATAGCTGAACAACACGCGGTGACATTTGCAGCTGGGCTAGCTACAGAGGGTCTCAAGCCATTCTGTACCATCTATTCAACATTCCTGCAACGAGGCTACGATCAGGTGGTCCACGATGTAGATCTTCAGAAACTACCAGTTCGATTTGCTATGGATAGAGCTGGTTTGGTAGGGGCAGATGGACCAACACATTGTGGAGCATTTGATATCACATATATGGCTTGCTTGCCCAACATGGTGGTCATGGCTCCATCTGATGAAGCTGAACTAATGCACATGGTGGCAACAGCCGCAGCCATAGATGACAGACCAAGCTGCTTTAGATTTCCAAGGGGAAATGGAGTTGGAGCTGTTTTGCCTCCCAACAATAAAGGAACCCCACTTGAGATAGGAAAAGGAAGAATACTTGTAGAAGGAAGCAGAGTTGCTATTTTGGGATATGGATCTATGGTTCAACAGTGCTTGCAAGCTGCTAAAATGCTCAAAACAATAGGTGTATCTGTGACTGTTGCTGATGCTAGGTTTTGTAAACCTCTGGATACTCATCTCATTAAGCGACTAGCAAAGGAGCATGAAATTCTGATTACAGTGGAAGAGGGATCCATAGGAGGTTTTGGATCTCATGTTTCACAATTCCTAAGCTTAGCTGGTCTTCTAGATGGACCCCTTAagTGGAGAGCAATGATGCTTCCTGATAGATACATCGATCATGGATCACCCCAAGACCAGATTGATGAAGCAGGACTTTCATCAAAACATATTGCCACAACAGTCTTATCTCTTCTGGAGAGGCCAAAACAAGTTCTCCAATTCATGTAA 2103 0.4536 MASFVNPTHSVPPSHKPPTPIRACRKQLCVRCSGEEERTMISKEREGWNINYSAHKPATPLLDTVNYPPHIKNLSSQDLEQLAAELRADIVHTVSKTGGHLSSSLGVVELSVALHHVFNTPHDKIIWDAYPHKILTGRRHKMHSIRKTCGLAGFPKREESVYDAFGAGHSSTSISAALGMAVGRDLLGKKNKVISVIGDGAMTGGQAYEGMNNAGFLDSNLIIILNDNRQVSLPTATLDGPATPVGALSTALTNIQASAQFRKLREAAKTITKQIGGQTHQVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVQDLVTILQKVKAMPAPGPVLIHVVTEKGKGYAPAEAAADKMHGVVKFDPKTGTQLKPQSATLSYTQYFAESLIKEAEQDNKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLATEGLKPFCTIYSTFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGNGVGAVLPPNNKGTPLEIGKGRILVEGSRVAILGYGSMVQQCLQAAKMLKTIGVSVTVADARFCKPLDTHLIKRLAKEHEILITVEEGSIGGFGSHVSQFLSLAGLLDGPLKWRAMMLPDRYIDHGSPQDQIDEAGLSSKHIATTVLSLLERPKQVLQFM 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4240 700 SMART Transket_pyr_3 380 545 IPR005475 -
Sto6g4240 700 MobiDBLite consensus disorder prediction 1 20 - -
Sto6g4240 700 SUPERFAMILY TK C-terminal domain-like 554 690 IPR009014 GO:0003824
Sto6g4240 700 Gene3D - 380 547 - -
Sto6g4240 700 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 64 690 IPR005477 GO:0008661|GO:0016114
Sto6g4240 700 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 59 442 IPR029061 -
Sto6g4240 700 CDD TPP_DXS 98 349 IPR005477 GO:0008661|GO:0016114
Sto6g4240 700 Gene3D - 54 352 - -
Sto6g4240 700 Pfam Transketolase, C-terminal domain 559 682 IPR033248 -
Sto6g4240 700 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 4 699 IPR005477 GO:0008661|GO:0016114
Sto6g4240 700 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 377 568 IPR029061 -
Sto6g4240 700 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 62 343 IPR005477 GO:0008661|GO:0016114
Sto6g4240 700 Gene3D - 559 691 IPR009014 GO:0003824
Sto6g4240 700 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 61 691 IPR005477 GO:0008661|GO:0016114
Sto6g4240 700 ProSitePatterns Transketolase signature 2. 486 502 IPR020826 -
Sto6g4240 700 Pfam Transketolase, pyrimidine binding domain 380 541 IPR005475 -
Sto6g4240 700 PANTHER 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE 2, CHLOROPLASTIC-RELATED 4 699 - -
Sto6g4240 700 CDD TPP_PYR_DXS_TK_like 386 539 - -
Sto6g4240 700 ProSitePatterns Transketolase signature 1. 87 106 IPR005474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4240 Sto-Chr6 45459950 45462870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4240 422 638 Acyl Lipid Metabolism Gene Families AT1G55510 24.464 5.25e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4240 K01662 - gmx:100798930 1185.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4240 6 45459950 45462870 Sto6g4240 6 45459950 45462870 ECH