Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4193 ATGGCGATTCATCTGCCTGGTTTCCACCCACCTAGCTATTCAGATTCAGTTCTTGGAGGAGTACCCTTGGATGATGCTTCAACGACTTCACCTGGAATGCCTGTTTCGGAGGCCACTCTTACTGGATCTTCACCATCTTCGcattccgaaaccctaaataaccGTTCTTTCGATCTGTCTGTACCAAATCAAATGGGGGTTTCTAATTCAATGTCCTTGCCTGATGAAGTCCAAGAAGACCAGATTATTGGTTCTTTTCCATCCAATACAAGTCTTTCTCCTCTCAATTCGGATTCCAAAACCCTAGGTAACTGTCCTTTCAACCCCTCACTTCATAATTCGAATGGCTCGTCTGGTACTAAAATTACCCTAGATGAGTGTTCACCTTCTGCATCAATGGACACGGACACCCTGGATGATCTTCCTCCAACTCTAGATGGGTCTTCACTGCCCATGGCGGCGGCAGTCGAGAGTAATTATTCCCTTGCATTTTGTGATTCTGATAGAGAACCTCAAGAAGAGGATCCCGAGCCGATTCAATCTCTAAACATATCTTTTTATACGTCTTTATCATCTCCCAAACAGTGGCCTTCGTGGTCTTCGTCTTCATTTCTGCCATCTAAAGAAGATGTGGTGGGTGCTGGGCTTGTAAATCTCGGCAATACGTGCTTTCTCAATGCTATCTTGCAATGCTTTACACATACCGTGCCATTAGTCCAGGGTCTTCGTTCTTTCAGTCATTCTGCTCCCTGTGAAGGTGGTATTGATGGGTTCTGTGCTCTTTGTGTTCTTCGCGATCACATTGAACTTTCATTAACATCTGCTGAAGGGATTATTTCACCTTTGAGATTTGTTGATAATTTGACATATTTTTCATCTTTCTTTAGGAGACACCAACAGGAGGATGCCCATGAATTTATGCAATGCGTCTTGGATAAACTGGAAAGATGTTGTTTAGATTTAAAGAATCAGAGTTATGAACATGTTGACAATCTAGTAGAGAAGATATTTGGAGGTCGTCTCATCAGCAAACTTCGATGCTGCAACTGCAGCCACTATTCTGATACTTATGAGCCTCTTATTGACTTTAGCTTGGAGATAGAAAATGTGGATACCCTTCCAAGTGCTCTGGAATCTTTCACCAAGGTGGAGACGATAGATGAGAAGTTTAAATGTGATAGCTGCAAGGAAGAAGTGTCCATGGAGAAGCAGCTTCTTTTAGATCAGGCACCCTCAGTTGCTGCATTTCATTTAAAGAGATTTAAGACAGATGGAACATATGTTGAGAAGATTGATAAACATGTGGAATTCCCTTTGGAATTGGACTTGCAGCCTTACACTGGTGGTAATCAGAGCAATAATGTGGCGTTGAAATATGATCTATATGCAATTGTCGTACATGTTGGATTTTCATCTACTTCTGGGCATTACTTTTGTTTTGTTCGCTCTTCACCTGACATGTGGTATAGATTGGATGACTCCAAGGTTACTAGGGTCCTAGGAGATTTTGTGCTGTCTCAAGAGGCATATATATTGCTCTATGCACAACAGGGCACACCGTGGCTATCTAGTATAATGGAAGTTTCAAAGACATGTTTGGTCCCAAGCATTTTGAATACTTCTCCTAAATCAGTTTTAGACAATGTTGACAGCTTATATAGCTCAAACCCTAGCGTACTAAATATTGTAAGTTGTGATGCAAATGCATCCAGAGAATATACTGAGCCAATATCTCATGATTCTTGTGGAGGTAGAAATGAAGTGCTTGAGTTCAATGATATTATAGATGCCTCTCATGATACCGGGCAGTTTCAATCTGAGTTAAATCAGGCAATTGATAGTTTTAATGGCTCTAGAGATGATAATACCACCCATGCGCAAGTGCCATGCAATGAGAGAAATGTTACTCTGTCCTCACTTGATGAAAACAGTGGTAGTCACGAGGTTGTTGATAGTATAGAGAAGGGTGGTTTCCATCCTTTAACTCCCCCCAGCTCTCCAGGTCCAGATGTTTTTTCTTCAGATACGAGTTACCAAATTCCACGTGATCACCTGAAGACGAAGAATCGTGAGAGCTGTAAAAGACCATTAAATAAGTCACCAGATGATTCTCAGAGAAAAGAAGCTGTGAGATATTTAAGCAAGAACGTGCATGGTTCAAGGCGATCCAAACTTCTGGGTGCTTTGACTGGGCCCCCTGGTGAAGGCCCTTCgaacaagagaaagaaaatggattCCATACCATttttagaGTGGTTCTTAAGGAACATAACCACCATGCCCTCCGCCACTTCCTCCACCTCCTCCATAACCACCACCATATGCACCACCTGCCCCATATCCGCCTCCACCTCCTCCGCCAGAGCCACCGCCACCACCATATCCTGCACTACCTCCACCGGCTCCTCCGCCACTTCCATATCCTCCTCCTTGTGCTCCTCCAGCACCATAGCCTGCTCCACCTCCACTTCCCCCACCTCCTCCATAACCAATCCCATGCTCTCCACTTCCACCATATCCTCCACCCGCTCCCCCACCTTGACCACCTCCATATCCTCCACTGTGCTCTCCTCCTGCACCATAGCCTCCACCGGAACCACCACCTTGACCACCTCCATAACCGCCACCGTGCTCTCCTCCTGCACCATAACCACCCCCGGCTCCACTGCCTCCACCACCTCCATAACCACCTCCGTGCTCTCCTCCAGCACCATAGCCTCCACCACTACCTGCACCAcctccaccaccacctccataacctcctcctccacctattccacctccacctccacctccagcaccaccaccacctccataGCCAATGCCATGTTCTCCACCACCCCCATAGCCTCCTCCTTCGCCACCCCCATAACCAACGCCGTGCTCTACTCCTCCACCATAACCGCCACCACCGCCACTTCCACCGCCACCTCCTCCTCCTGCACCACCATATCCTATACCATAAGCTGCATGAATGGAAGGGGCGTCAAAAGTGAGGAGGGCCCTTCTGGCAGAACATAA 3021 0.4416 MAIHLPGFHPPSYSDSVLGGVPLDDASTTSPGMPVSEATLTGSSPSSHSETLNNRSFDLSVPNQMGVSNSMSLPDEVQEDQIIGSFPSNTSLSPLNSDSKTLGNCPFNPSLHNSNGSSGTKITLDECSPSASMDTDTLDDLPPTLDGSSLPMAAAVESNYSLAFCDSDREPQEEDPEPIQSLNISFYTSLSSPKQWPSWSSSSFLPSKEDVVGAGLVNLGNTCFLNAILQCFTHTVPLVQGLRSFSHSAPCEGGIDGFCALCVLRDHIELSLTSAEGIISPLRFVDNLTYFSSFFRRHQQEDAHEFMQCVLDKLERCCLDLKNQSYEHVDNLVEKIFGGRLISKLRCCNCSHYSDTYEPLIDFSLEIENVDTLPSALESFTKVETIDEKFKCDSCKEEVSMEKQLLLDQAPSVAAFHLKRFKTDGTYVEKIDKHVEFPLELDLQPYTGGNQSNNVALKYDLYAIVVHVGFSSTSGHYFCFVRSSPDMWYRLDDSKVTRVLGDFVLSQEAYILLYAQQGTPWLSSIMEVSKTCLVPSILNTSPKSVLDNVDSLYSSNPSVLNIVSCDANASREYTEPISHDSCGGRNEVLEFNDIIDASHDTGQFQSELNQAIDSFNGSRDDNTTHAQVPCNERNVTLSSLDENSGSHEVVDSIEKGGFHPLTPPSSPGPDVFSSDTSYQIPRDHLKTKNRESCKRPLNKSPDDSQRKEAVRYLSKNVHGSRRSKLLGALTGPPGEGPSNKRKKMDSIPFLEWFLRNITTMPSATSSTSSITTTICTTCPISASTSSARATATTISCTTSTGSSATSISSSLCSSSTIACSTSTSPTSSITNPMLSTSTISSTRSPTLTTSISSTVLSSCTIASTGTTTLTTSITATVLSSCTITTPGSTASTTSITTSVLSSSTIASTTTCTTSTTTSITSSSTYSTSTSTSSTTTTSIANAMFSTTPIASSFATPITNAVLYSSTITATTATSTATSSSCTTISYTISCMNGRGVKSEEGPSGRT 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4193 1006 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 459 477 IPR018200 GO:0004843|GO:0006511
Sto6g4193 1006 MobiDBLite consensus disorder prediction 654 743 - -
Sto6g4193 1006 MobiDBLite consensus disorder prediction 106 148 - -
Sto6g4193 1006 MobiDBLite consensus disorder prediction 29 71 - -
Sto6g4193 1006 Pfam Ubiquitin carboxyl-terminal hydrolase 215 514 IPR001394 GO:0004843|GO:0016579
Sto6g4193 1006 MobiDBLite consensus disorder prediction 681 715 - -
Sto6g4193 1006 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 208 543 - -
Sto6g4193 1006 MobiDBLite consensus disorder prediction 11 71 - -
Sto6g4193 1006 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 215 230 IPR018200 GO:0004843|GO:0006511
Sto6g4193 1006 Gene3D Cysteine proteinases 208 521 - -
Sto6g4193 1006 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 208 543 - -
Sto6g4193 1006 MobiDBLite consensus disorder prediction 821 841 - -
Sto6g4193 1006 MobiDBLite consensus disorder prediction 106 137 - -
Sto6g4193 1006 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 214 517 IPR028889 -
Sto6g4193 1006 SUPERFAMILY Cysteine proteinases 214 515 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4193 Sto-Chr6 45160503 45166269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4193 215 516 Miscellaneous Gene Families AT2G24640 36.102 4.23e-54 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4193 K11855 - qsu:112012452 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4193 6 45160503 45166269 Sto6g4193 6 45160503 45166269 ECH