Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4173 ATGATCATGTCGACAATATTGTCAGTTGAGTCCGCTTTGCTCCGCAGCAAAGTGCTCTCTTACAAACAACGTTTATTTAGATTATATTATACTGCTTCGTCGGCAGCAATTATAGAAGACCATGTGTTCGACGAAAGTCCAAGAGTTGATGATGCCAATGTAATGTTCAATTTTGGAAGAGATAGATTGAGAAATCCACGTTTCCGAAGAAAACACAGTTTGTTTCCTATAGTGGTCAGGGTGATTAAATCCTTGAATTCGGAGGCTGCGCTTGCAGGAGATAAAACGTTCTTGAGAGCTGTAAGGAGGTATGGGTTTCCTCACTCAGTCGCTTCCTTTAGAATTATCATTCACATATATGCATCAGCAGGGATGCATATGGAAGTATTTGCTTTGCTTAGAGATATTGTTGGATTCTATAGGAAAGTTAAGTTTGATACATTCATGTTGTTCTCAACTTTGATAGATTCACCTCACCGTGTGGAAAGATCAATTGTTGTGTTTGACATTCTCATAAAAGTATTTGCATCCAATTCCATGCTTAacaatgcatttgatgtgtttatgaGAGTTAAGCATATTGGGCTTGAGCCTGATATTTTGTCATGCAATTTCTTGTTGAAATGCTTGGTAGAAGCAGGCAGAGTGGAGTTGGTAAGAAAATTATTTGAAGAGCTGAAAGTCTCAGGTCCAATACCAAATATCTACACCTATACAATTATGATGAACTTTTACTGTAGAGGAGATCATGGGCAGGGCGTAGATATTAACCTGGCTACTGGGATTTTTGAGGAAATATGGAAAAGTGGGGAAACCCCAACTGCCGTCACATATAGTGTTTATATTCATGGACTTTGCAAATGTGGTTTTGTTGATTTtgctttgcaagtaatttgtgATTTGAGGTATAGAAACCAGCCTCTCAATAGTTATTGTTTTAATGCTGTAATATACGGGCTTTGTCAAAGAGGTGCAGTTCATGAAGCTTTGCGAGTTTTGGAGGAAATGCGGAGCTATGGAATATTGCCTGATGTTTGTAGCTACAGTATATTAATTGATGCATATTGTAGGAAAGGAGATTTAGAGAAAGGTGTTGACTTGATAGGAGAGatggaactaaataatataataccATCCATATTTAGCTACACCTCCCTTATCCACGGTCTATGCAAGCGTAAGATGATGGAATCTTCAATGAATATATTTCGAAAAATTGGTGCTTCTGGTTGCAAATATGATCTGATGGCATATGAAACTTTAATCCATGGATTTTGCTGTCAAGGGGATATAGATTCAGCCAACAAGCTTTTGGAGGAGATGATGAGAAATAATCTGGCTCCTACTTCTTTTAGTTTCCACAGTCTAATAGTAGGATTCTACAAACTGGGACTCTTAGACAAGGTggtgagaattttaaaattcatgcaAAAAGTTGGTATCTTGCCAGATACCACCACTTGCAATTTTATTATTGATGGACTCTGCAGAGAAGATCACTTTATGGAAGCCTTGACAGTGTTGGAAGAGTTCCAAGACCAAGGAATTGACCTAAACTCGCTTTCATATAATGCAATCATCTACAGGCTGTGCAAGGGAAGACATCCAGAAAGGGCATGGGAACTTTTTCCAAGAATGCTTAAAAGAAGTGTACTTCCTGGAGTTGTTAATTATACTACTCTTATAGATGGGTTTGCCAAACAATCAAATCCAGAGAAGGCCTTGATGTTGTTCTCCAAAATGCTAAAAGTTGGAGTCACTCCCAACACCGTAACATATACAGTCCTGATTAACATATTTTGCCATCGGGGCAAAATGCGTGAAGCACTTAGCACTTTTAACGAAATGATAGAAAAGGGTTTGGATCCAGATCATATTTCATATACATCTTTAATTGCTGGCTTTTGTAGTACTGGAGATATAAGAAAGGCCCGGGCGGTATTCCAAGCAATGTTGAGGAAGGGCCTTTTGCCAGATGTAACTACTTACACATGTTTGATGGATGGATTTTGCAAGTTAAATTGTATAGATGAGGCCTCTTCTCTGTTtgatgaaatgaaaagaaatgcAGTTACTCCTAATGTTGTAACTTACACTGTTCTCATTGCTTGGTATCGTAAGCATGGATATGTATATCAGGCAGATAAGTTATATCATGaaatgaaggttaagggaattTCACCAGATGACATAGCTCACACGGTTCTTAGTCTGAAAGCTGGTAACTGCAGAAGCAAAAGTATTATTGTATCTTGA 2256 0.3635 MIMSTILSVESALLRSKVLSYKQRLFRLYYTASSAAIIEDHVFDESPRVDDANVMFNFGRDRLRNPRFRRKHSLFPIVVRVIKSLNSEAALAGDKTFLRAVRRYGFPHSVASFRIIIHIYASAGMHMEVFALLRDIVGFYRKVKFDTFMLFSTLIDSPHRVERSIVVFDILIKVFASNSMLNNAFDVFMRVKHIGLEPDILSCNFLLKCLVEAGRVELVRKLFEELKVSGPIPNIYTYTIMMNFYCRGDHGQGVDINLATGIFEEIWKSGETPTAVTYSVYIHGLCKCGFVDFALQVICDLRYRNQPLNSYCFNAVIYGLCQRGAVHEALRVLEEMRSYGILPDVCSYSILIDAYCRKGDLEKGVDLIGEMELNNIIPSIFSYTSLIHGLCKRKMMESSMNIFRKIGASGCKYDLMAYETLIHGFCCQGDIDSANKLLEEMMRNNLAPTSFSFHSLIVGFYKLGLLDKVVRILKFMQKVGILPDTTTCNFIIDGLCREDHFMEALTVLEEFQDQGIDLNSLSYNAIIYRLCKGRHPERAWELFPRMLKRSVLPGVVNYTTLIDGFAKQSNPEKALMLFSKMLKVGVTPNTVTYTVLINIFCHRGKMREALSTFNEMIEKGLDPDHISYTSLIAGFCSTGDIRKARAVFQAMLRKGLLPDVTTYTCLMDGFCKLNCIDEASSLFDEMKRNAVTPNVVTYTVLIAWYRKHGYVYQADKLYHEMKVKGISPDDIAHTVLSLKAGNCRSKSIIVS 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4173 751 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 734 - -
Sto6g4173 751 Pfam PPR repeat 410 441 IPR002885 -
Sto6g4173 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Sto6g4173 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 198 IPR002885 -
Sto6g4173 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 623 IPR002885 -
Sto6g4173 751 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 4 734 - -
Sto6g4173 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Sto6g4173 751 TIGRFAM PPR: pentatricopeptide repeat domain 558 590 IPR002885 -
Sto6g4173 751 TIGRFAM PPR: pentatricopeptide repeat domain 311 345 IPR002885 -
Sto6g4173 751 TIGRFAM PPR: pentatricopeptide repeat domain 696 729 IPR002885 -
Sto6g4173 751 TIGRFAM PPR: pentatricopeptide repeat domain 347 379 IPR002885 -
Sto6g4173 751 TIGRFAM PPR: pentatricopeptide repeat domain 381 414 IPR002885 -
Sto6g4173 751 TIGRFAM PPR: pentatricopeptide repeat domain 452 485 IPR002885 -
Sto6g4173 751 TIGRFAM PPR: pentatricopeptide repeat domain 626 660 IPR002885 -
Sto6g4173 751 TIGRFAM PPR: pentatricopeptide repeat domain 487 519 IPR002885 -
Sto6g4173 751 TIGRFAM PPR: pentatricopeptide repeat domain 662 695 IPR002885 -
Sto6g4173 751 TIGRFAM PPR: pentatricopeptide repeat domain 591 624 IPR002885 -
Sto6g4173 751 TIGRFAM PPR: pentatricopeptide repeat domain 417 449 IPR002885 -
Sto6g4173 751 TIGRFAM PPR: pentatricopeptide repeat domain 202 234 IPR002885 -
Sto6g4173 751 TIGRFAM PPR: pentatricopeptide repeat domain 522 554 IPR002885 -
Sto6g4173 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 554 588 IPR002885 -
Sto6g4173 751 Gene3D Tetratricopeptide repeat domain 252 372 IPR011990 GO:0005515
Sto6g4173 751 Pfam PPR repeat family 588 637 IPR002885 -
Sto6g4173 751 Pfam PPR repeat family 658 702 IPR002885 -
Sto6g4173 751 Pfam PPR repeat family 309 357 IPR002885 -
Sto6g4173 751 Pfam PPR repeat family 483 532 IPR002885 -
Sto6g4173 751 Pfam PPR repeat family 198 247 IPR002885 -
Sto6g4173 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Sto6g4173 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Sto6g4173 751 Gene3D Tetratricopeptide repeat domain 96 251 IPR011990 GO:0005515
Sto6g4173 751 Gene3D Tetratricopeptide repeat domain 654 747 IPR011990 GO:0005515
Sto6g4173 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
Sto6g4173 751 SUPERFAMILY TPR-like 408 654 IPR011990 GO:0005515
Sto6g4173 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 659 693 IPR002885 -
Sto6g4173 751 Pfam PPR repeat 276 302 IPR002885 -
Sto6g4173 751 Pfam PPR repeat 451 481 IPR002885 -
Sto6g4173 751 Pfam PPR repeat 166 195 IPR002885 -
Sto6g4173 751 Pfam PPR repeat 557 586 IPR002885 -
Sto6g4173 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Sto6g4173 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Sto6g4173 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 624 658 IPR002885 -
Sto6g4173 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Sto6g4173 751 Gene3D Tetratricopeptide repeat domain 514 583 IPR011990 GO:0005515
Sto6g4173 751 Gene3D Tetratricopeptide repeat domain 444 513 IPR011990 GO:0005515
Sto6g4173 751 Gene3D Tetratricopeptide repeat domain 584 653 IPR011990 GO:0005515
Sto6g4173 751 Gene3D Tetratricopeptide repeat domain 373 443 IPR011990 GO:0005515
Sto6g4173 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Sto6g4173 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 273 IPR002885 -
Sto6g4173 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 694 728 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g4173 259 736 Glycosyltransferase AT1G05670 30.689 9.57e-70 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4173 - - gmx:100818511 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4173 6 45011316 45013571 Sto6g4173 6 45011316 45013571 ECH