Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4168 TTGAAATTCGTCACTCACTGGATTGAGAGATTTGAACGAAGGCCGATCAAACTTTCCACTGCCCAACGACAACAGCATCAGAAGGAGACCAGAGTCTCTGACGCCAACGCCGGAGACACCTCGGTACATGAGAAGCTGCTGCTATGCCTGAAGCATCAATGTCGCGGTGAAGGACTTGGTAAAATGCGATCAACACCGTGTGCGATAAAAACTGTTAAAGTCAGTAATGTTTCCTTGGGAGCAACTGAGCAAGACATTAGGgagttcttttctttttctggtgAAATTCAGTATGTTGAACTGAGGAGTCATGATGAACGGTCTCAAATTGCCTATGTCACCTTCAAGGATTCACAAGGAGCTGAGACTGCAGTTCTACTATCAGGAGCAACAATAGTTGATCTGTCAGTTACAATAACTCTTGATCCAGAGTACCAGCTTCCACCAGCTGCTTTGGCATCATCTGAAACAGAAAGTAGAACTCCTAGAGGTGCTGAATCTGCCTTAGGGAAGGCTGAGGATGTGGTCACCAGCATGCTGGCAAAGGGCTTTGTTTTAGGGAAAGATGCTGTCAACAAAGCAAAGACTTTTGATGAGAAGCACCAGCTAACTTCAACAGCCTCAGCAAAAGTTGCATCTTTTGACCAGAAAATTGGTCTCAGTGAGAAAATAACTGCTGGTGCTTCGGTTGTAAGTGATAGAGTTCGAGAAGTGGATCAAAAGTTTCACGTGTCAGAGAAAACCAAAACAGCATTTGCAGCTGCAGAACAGAAAGTCAGTGATGCTGGTTCTGCTATAATGAAAAATCGCTATATACTCACTGGAGCTTCATGGGTAACAGGTGCTTTCAGTAAGGTTGCGAAGGCAGCTGGAGACGTAGGACAGAAGACAAAGGACAAGGTGGAGAATGCAGAAAGTGGAACAAAGGCACAAGGATCAGTAAACCCAGGGAAGAAAGAAAGGACACGTGTAAATCACGTACTTCCTGTGAGGCCAGCTCCGCTAGGTTTGGcagaaaacccaaaaacccataGTTGGCATAGCATCCCGTTCCCTACCACAATTCGAGGTGCATTAACGGTCCCGAAATCCAGCTGTGTTCCAATAATCGGCGCATCCCTGCTATCCTGCGCCTTAACTGGAGATGCCCTTTACCCTACACTACCGCCCCTTCCAAGATGCAATAgctaa 1191 0.4458 LKFVTHWIERFERRPIKLSTAQRQQHQKETRVSDANAGDTSVHEKLLLCLKHQCRGEGLGKMRSTPCAIKTVKVSNVSLGATEQDIREFFSFSGEIQYVELRSHDERSQIAYVTFKDSQGAETAVLLSGATIVDLSVTITLDPEYQLPPAALASSETESRTPRGAESALGKAEDVVTSMLAKGFVLGKDAVNKAKTFDEKHQLTSTASAKVASFDQKIGLSEKITAGASVVSDRVREVDQKFHVSEKTKTAFAAAEQKVSDAGSAIMKNRYILTGASWVTGAFSKVAKAAGDVGQKTKDKVENAESGTKAQGSVNPGKKERTRVNHVLPVRPAPLGLAENPKTHSWHSIPFPTTIRGALTVPKSSCVPIIGASLLSCALTGDALYPTLPPLPRCNS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4168 396 Gene3D - 68 140 IPR012677 -
Sto6g4168 396 MobiDBLite consensus disorder prediction 294 319 - -
Sto6g4168 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 132 IPR000504 GO:0003723
Sto6g4168 396 SMART rrm1_1 71 140 IPR000504 GO:0003723
Sto6g4168 396 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 68 309 - -
Sto6g4168 396 MobiDBLite consensus disorder prediction 150 169 - -
Sto6g4168 396 SUPERFAMILY RNA-binding domain, RBD 69 142 IPR035979 GO:0003676
Sto6g4168 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 144 IPR000504 GO:0003723
Sto6g4168 396 CDD RRM_Vip1_like 72 140 IPR034360 -
Sto6g4168 396 PANTHER BINDING PARTNER OF ACD11 1 68 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4168 Sto-Chr6 44990150 44996553 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4168 - - gmx:100809613 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4168 6 44990150 44996553 Sto6g4168 6 44990150 44996553 ECH