Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4079 ATGGCGACTGAATCTGGCGCCAAACCTCCCTCAACAACTGCGGGGGAATCTTACATTGGCAGCTTCATAAGCCTGATTTCCAAGTACGAGATTCGTTACGAAGGCGTTTTGTATCACCTCAACGTCCAGGATTCCACCATTGGCTTGAAGAACGATCCCAGGATTAATCCTGGTGATAATATGGTTGTTCTTTGGAGTTGGAGGTCATATGGAACGGAGGGGAGAAGAAAAGATGGTCCACAAGTTCCTCCAAGTGAAAAGGTTTATGAATACATTCTTTTCCGAGGAAATGATATTAAGGTCAAATCCCCCCCTACATCTGCCAAAGCAGAAGAGCAGATATTCAGTGATCCAGCTATTATTCAGTCACAATATTCCGGAGCGCCTTCAAGTTCTCCTATGGCTTCAGTTGGTGGGAGAAGTACCACAGAATCAATTCCAAGGCAAGATACTCCTGCTATGAGCAGTCGAGACCTTCCTGTTGGGCTGCCTTCTCATCAGTCTGCTATACAGCTGGGCCCATCAGATCAATCTGCTGCTACTGAAGTTTCTGGTGCTCCATCTTTCTCTACACCAAAGTATTGGCCAGAGTATAGTGGAATATCAGGAAGTAGCTCTCACTCTCTGCAGTCACCTGGTCCTCCTCTGCCCCCTTCAGTAGTATCACCTATAAATATGCAGAACTGGATGCAAACTCCAGAAACTCAGGCACCTTCAAAAGTGGGGTGGACTATATCAGAGCGTGGTAATCCTTTATCTTCTGTTACTGCTTCGTCTCTTGTAAATCCAGCTTATGAACCCTCTCCTATGTCATTACAAACGTCTGATTCTCTAGATATTCCGTCTCTTTTGTCCTCTAAGACACCAATGCCATATCATGCATCTATGACTTTATCGAATATGCCTTCATATTCTTCACCTTTCCAAGGCATAAATTCTATTGAAGGTCAATTTTCTGGTACAATTTCTCCTGACACAAGATCAATCTTTCCTGGTCATTCTGTCCATCATTCTGCTTCTTCATCTATTGATTCTACTCCGGGCCCCTTGCCAAGACCTCCATCTTTGTTAACTCCAGATCAGTTTGCTCAGCCTAGACagaatttcttttcttcaacacAGAACCTGACCCCTGATCAGAAGCATATGATTTCTCTGACACCAACGTCCTCTAGCTCCACTTTTATAGTACCTTCTCCGGCATCTCAAGCGCCATTGTTGCCATTGCCGCCATTGCCAACTTCAGTGCATAAGCCTCAGTACTCAGCTTCGCAGTTCAATGAAGAGTTTGATTTTGAGGCTATGAATGAAAAATTCAAAAAGGATGAAGTATGGGGTTCACTTGGGAGGGCATCTAAGACAATAGAGGGATTGGAAGATAATGCTCCCACTGTCAGTTTGGgtgagagagagtgtcatgGGCTGATgccaaacccaaactctaatCCTGCTTATAAGAAAGATGACTTTTTTGACACAATTTCATGCAACTCTTTGTCTCATGGATCAAGGAACGGACAGAATCGTCTTTCTGAGAGAATGAAGCTAGATTCTGAGACATTTGGTAATTTCCATCAGAGGCCTCCTGTGGGTTATGGTGGATATGGCCCTGGACGCGGTGATAATTACCGGGGCTCATACAATATGGGAAGGGGTTACGGCTATGGTGGGCGAGGGCGAGGCAGGAACCCGCCTTTCTATTAG 1704 0.4354 MATESGAKPPSTTAGESYIGSFISLISKYEIRYEGVLYHLNVQDSTIGLKNDPRINPGDNMVVLWSWRSYGTEGRRKDGPQVPPSEKVYEYILFRGNDIKVKSPPTSAKAEEQIFSDPAIIQSQYSGAPSSSPMASVGGRSTTESIPRQDTPAMSSRDLPVGLPSHQSAIQLGPSDQSAATEVSGAPSFSTPKYWPEYSGISGSSSHSLQSPGPPLPPSVVSPINMQNWMQTPETQAPSKVGWTISERGNPLSSVTASSLVNPAYEPSPMSLQTSDSLDIPSLLSSKTPMPYHASMTLSNMPSYSSPFQGINSIEGQFSGTISPDTRSIFPGHSVHHSASSSIDSTPGPLPRPPSLLTPDQFAQPRQNFFSSTQNLTPDQKHMISLTPTSSSSTFIVPSPASQAPLLPLPPLPTSVHKPQYSASQFNEEFDFEAMNEKFKKDEVWGSLGRASKTIEGLEDNAPTVSLGERECHGLMPNPNSNPAYKKDDFFDTISCNSLSHGSRNGQNRLSERMKLDSETFGNFHQRPPVGYGGYGPGRGDNYRGSYNMGRGYGYGGRGRGRNPPFY 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4079 567 CDD LSm14_N 15 100 IPR025609 -
Sto6g4079 567 Pfam FDF domain 425 523 IPR019050 -
Sto6g4079 567 SMART LSM14_2 12 125 IPR025609 -
Sto6g4079 567 MobiDBLite consensus disorder prediction 125 152 - -
Sto6g4079 567 PANTHER DECAPPING 5-LIKE PROTEIN-RELATED 11 557 - -
Sto6g4079 567 MobiDBLite consensus disorder prediction 320 361 - -
Sto6g4079 567 ProSiteProfiles TFG box profile. 505 525 IPR025768 -
Sto6g4079 567 PANTHER SCD6 PROTEIN-RELATED 11 557 - -
Sto6g4079 567 ProSiteProfiles DFDF domain profile. 418 454 IPR025762 -
Sto6g4079 567 MobiDBLite consensus disorder prediction 168 188 - -
Sto6g4079 567 Gene3D - 10 103 - -
Sto6g4079 567 SUPERFAMILY Sm-like ribonucleoproteins 54 101 IPR010920 -
Sto6g4079 567 SUPERFAMILY Sm-like ribonucleoproteins 17 51 IPR010920 -
Sto6g4079 567 MobiDBLite consensus disorder prediction 125 188 - -
Sto6g4079 567 ProSiteProfiles FFD box profile. 483 498 IPR025761 -
Sto6g4079 567 MobiDBLite consensus disorder prediction 320 346 - -
Sto6g4079 567 Pfam Scd6-like Sm domain 18 100 IPR025609 -
Sto6g4079 567 SMART FDF_2 424 525 IPR019050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4079 Sto-Chr6 44387722 44391435 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4079 K18749 - gmx:102669894 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4079 6 44387722 44391435 Sto6g4079 6 44387722 44391435 ECH