Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4073 ATGGCTGCAGCTAGGGTTTTCGGGGCATACAGTAGAGCACTGATGGCGGCGGCGAAGGGAGCTGCGTCCGGCCCAGCGACTGCGGTGAAGACGGCCTCGTCCAAGAGTCGAGCCAACACCGGCTTTCAGAAGCTGGTTCCTGTCTCTCCGCAGCTCGGCAAGTTTCTCGGTTCCTCTCAAGCTTCACGCTCTGATGCCATCAAGAAGGTTTGGGATTACATCAAGCTCCACAATCTTCAGAATCCTGCAAATAAGAAGGAAATCTTTTGTGACGAGAAGTTGAAGACCATCTTTGATGGGAAAGATCAAGTAGGATTCACAGAGATTGCTAGGTTTCTGTCAAACCATTTTGTGAAATCAGGCTGA 366 0.5082 MAAARVFGAYSRALMAAAKGAASGPATAVKTASSKSRANTGFQKLVPVSPQLGKFLGSSQASRSDAIKKVWDYIKLHNLQNPANKKEIFCDEKLKTIFDGKDQVGFTEIARFLSNHFVKSG 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4073 121 Gene3D SWIB/MDM2 domain 35 121 IPR036885 -
Sto6g4073 121 CDD SWIB-MDM2_like 46 117 - -
Sto6g4073 121 PANTHER UPSTREAM ACTIVATION FACTOR SUBUNIT UAF30-LIKE 1 120 - -
Sto6g4073 121 SUPERFAMILY SWIB/MDM2 domain 35 119 IPR036885 -
Sto6g4073 121 Pfam SWIB/MDM2 domain 45 117 IPR003121 -
Sto6g4073 121 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 120 - -
Sto6g4073 121 SMART swib_2 42 121 IPR019835 -
Sto6g4073 121 ProSiteProfiles SWIB/MDM2 domain profile. 41 119 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4073 Sto-Chr6 44327907 44329214 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Sto6g4073 SWIB 5.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4073 - - gmx:100795307 149.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4073 6 44327907 44329214 Sto6g4073 6 44327907 44329214 ECH