Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4027 ATGTTCGTCAAGAAGCTTGTCGAGAAAGCTTCCATCAAGAAGCCTGGCGGAAATTCAGATGGTTTAAAAGCCAGCGATGTAGACCCACGTCTGGTTTTTCATTATGGGGTCCCATCCTATGGTAACAAATTAGCTTATGACAACGTTCAGAAGATTCTTGCTCTTTCCACAAAAGATGGTAGGATTAAACTATATGGAAAAGATAACACTCAGGCCCTTCTCCAATCTACAGAGCCAGTGCCTAGCAAGTTTTTACAGTTCATCCACAATCAAGGCATCCTTATTAATGTCACTTCCAATAACCATATTGAGGTTTGGGACATTGACAAGAAGCTGCTGTCTCATGTTTACGTTGTTAAAGAAGAAATTACCTCCTTTGCTGTCATTCAACATAGCTTCTATATGTATATTGGAGATTCGGTTGGCAATATTTCGGTTTTGAAGCTTGATCAAGAAACATGGCATGTAGTACAGATGAAATACACCATACCTCTCTCAGCTTCTTATGggAATCCATCTGAAGTGTCTGATGATACTTCTGTTGCTCACATACTACCTCAACTAGCTGGTGAAAGTAAGAGGGTTCTCATAATTTTTAGGAATGGCCAAATAATATTATGGGATATTCGAGAAAGCAGATCTATTTTTAGAACTGGAGGAAATGTGCCACAATCTTCTCATAGTGAAACTAAGAAAGTGACTTCTGCATGTTGGGCATGTCCTTTTGGAAGTAAAGTGGTTGTACGGTACACCAATGGAGAGATTTTAATTTGGCATATCCCTTCCCAAAACATAGGAAATGATTCAGAATCTGATCATACTAGTCAAAACACTCCTATGTTCAAGCTGAACCTGGGATATAAATCAGATAAAATTCCCATAGGGTCAGTAAAATGGATTTATGCTGAAGGAAAGGCAAGTCGACTATATGTCATTGGAGCTTCTGACTTTGCATCTCCAAACTTGTTGCAGGTGGTGTTATTGAATGAGAACACTGAATCTCGCACAATTAAGCTGGGCCTTCATTTGGCTGAGTGTTGTGTTGATATGGAGATCATATCTACTTCAACTGAACAAagcaagaataaacagggttcTTTCACTTTGCTTGGGAAATCAGGCCATGTATATCTCTACGATGATACTTTGATTGAAAGATATCTTCTACAATGTCAATCCAAGTCCACACCCTCACTGCCAAAGGAAGTTTCTGTGAAGTTGCCACTGGCAGATTCAACTATCACAGCAGCAAAGTTCATCTCAGACAATCCTAATGTGCTAAATCCTGGTGATGAGGATCACATTCAGCTCTTGAAAAACTATCCACCGCTTATTCCTATTGAAACAAAACCCAAAGATGGATCTATTATGAATTCTGCCAACTTCACTGGATTTTCGAAAGTTAAAAACTTGTACATAACAGGCCACAGCAATGGAGCCATATCTTTCTGGGATGCATCATGTCCCTTTTTCATCCCAATTTTACAGTTGAAGCAACAGAGTGACAATGAGTTTTCTTCAAGCGATACACCAATTACGGCATTATACTTTGACAGCAACTCCCCTCTTCTTGTTTCTGGAGACCAGAGTGGAATGGTTCGCATCTTCAGATTCAAACCTGAACCATATTCAATCAACAACTTCATGTCTCTTACCGGAAGTACAAAGAAAGGGACGGATCATATAATCCATAGTGTGAAACTTGTAAAGACTAATGGTGCTGTGCTGTGTATAAACATAGATCATGCATCAAGACATCTTGCTGTTGGTTCTGATCAAGGATATGTTTCAGTTATTGATATGGATGGACCAAATCTATTATATCAGAAACAAATCACAAGTGAAATCAGTACTGGTATCATCTCTCTGCAGTTCCAAACCTGCAGTTTGAATGGCTTTGAGAAAAACGTATTAGCAGTTGGAACAAAGGACTCATCTGTTTTGGCACTTGATAGTGAAACTGGAAACACTTTGAGCACCAGTACTGTTCATCCTAAGAAGCCGTCTAAAGCTCTGCTCATGCAGGTGTTGGATGGAAAAGGAGAATTGGCCAAGGGATCAATTACAAAAGAGGGATTGGACACAAGCGAAGGGAACCATATTGACGATACAACAAAACAATTGGGTATTTTGTTGTGTTCTGAGAAAGCTTTATATGTCTATTCTTTAGTGCATGTTATTCAGGGAGTTAAAAAAGTGCTTTACAAGAAGAAGTTTCATTCCTCCTCCTGTTGCTGGGCATCTACATTTTACAGTCATTCTGATATTGGTCTTGTACTCCTTTTCACCAATGGAAAAATAGAACTAAGATCTTTGCCAGAATTGTCCCTGATAGTGGAGACTTCgattagaggtttcacatgtTCACCTCCAAAATTGAAGTCATTTTGTGAGAATCAGATATGTTGTTCACCCAGAGGCGATCTTGTTTTGGTGAATGGTGACCAGGAAATTTTTGTTGCTTCATTGTTGGTCAAGAGGGATATCTTCAGGCTTTTGGACGGCATCAGATGTGTCTACAGGAAAGAAAGAATGCTGCCACAAGAAGAGGTTGTCCCTGCCCCAGTCATCCATAAGGAGAAGAAAAGGGGTATATTCAGCTCTGTCATCAAAGATTTTACTGGCAGTAAAGAAAAGCAAGTGACCCTCATGGAAACAGAAGATACAAAAGAAAGCATCCAGGAACTCTCAGTGATCTTTTCAAATACAAATTTCCCATGTGATGCTGACAATAATGATAACCCTACCAACGATGAAAATGAGCTGGAATTAAACATAGATGACATTGACCTAGACGATCCTGGAGAGAAACGGAAAGATCAAAATATATTGGGAGCTCTTAATAAGAAGAAATTGGCTGGCAAGTTTCAGGCTCTAAAAGGAAAATTGATAGACATGAAGGGCAACAACCAGAAAACCTCAGGTAAGGAAGAGCAACAAGAAGAGAAAGCTGATGCAGTTGATCAAATCAAGAAGAAATAtggcttttcttcttcctccaatGAAACAAGCGTTGCTAAATTGGCACAAAGCAAGCTGCAGGAGAACATTAAGAAACTGCAGGGTATCAACCTTCGAACTACAGAGATGCAAGAAACAGCAAGGTCATTTTCATCATTGGCAAAACAAGTGCTCCGAACTGCTGAACAGGATAAACGAAGTTGA 3165 0.387 MFVKKLVEKASIKKPGGNSDGLKASDVDPRLVFHYGVPSYGNKLAYDNVQKILALSTKDGRIKLYGKDNTQALLQSTEPVPSKFLQFIHNQGILINVTSNNHIEVWDIDKKLLSHVYVVKEEITSFAVIQHSFYMYIGDSVGNISVLKLDQETWHVVQMKYTIPLSASYGNPSEVSDDTSVAHILPQLAGESKRVLIIFRNGQIILWDIRESRSIFRTGGNVPQSSHSETKKVTSACWACPFGSKVVVRYTNGEILIWHIPSQNIGNDSESDHTSQNTPMFKLNLGYKSDKIPIGSVKWIYAEGKASRLYVIGASDFASPNLLQVVLLNENTESRTIKLGLHLAECCVDMEIISTSTEQSKNKQGSFTLLGKSGHVYLYDDTLIERYLLQCQSKSTPSLPKEVSVKLPLADSTITAAKFISDNPNVLNPGDEDHIQLLKNYPPLIPIETKPKDGSIMNSANFTGFSKVKNLYITGHSNGAISFWDASCPFFIPILQLKQQSDNEFSSSDTPITALYFDSNSPLLVSGDQSGMVRIFRFKPEPYSINNFMSLTGSTKKGTDHIIHSVKLVKTNGAVLCINIDHASRHLAVGSDQGYVSVIDMDGPNLLYQKQITSEISTGIISLQFQTCSLNGFEKNVLAVGTKDSSVLALDSETGNTLSTSTVHPKKPSKALLMQVLDGKGELAKGSITKEGLDTSEGNHIDDTTKQLGILLCSEKALYVYSLVHVIQGVKKVLYKKKFHSSSCCWASTFYSHSDIGLVLLFTNGKIELRSLPELSLIVETSIRGFTCSPPKLKSFCENQICCSPRGDLVLVNGDQEIFVASLLVKRDIFRLLDGIRCVYRKERMLPQEEVVPAPVIHKEKKRGIFSSVIKDFTGSKEKQVTLMETEDTKESIQELSVIFSNTNFPCDADNNDNPTNDENELELNIDDIDLDDPGEKRKDQNILGALNKKKLAGKFQALKGKLIDMKGNNQKTSGKEEQQEEKADAVDQIKKKYGFSSSSNETSVAKLAQSKLQENIKKLQGINLRTTEMQETARSFSSLAKQVLRTAEQDKRS 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4027 1054 Pfam Lethal giant larvae(Lgl) like, C-terminal 726 829 IPR013905 -
Sto6g4027 1054 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 1 1053 - -
Sto6g4027 1054 SMART WD40_4 559 600 IPR001680 GO:0005515
Sto6g4027 1054 SMART WD40_4 219 259 IPR001680 GO:0005515
Sto6g4027 1054 SMART WD40_4 400 485 IPR001680 GO:0005515
Sto6g4027 1054 SMART WD40_4 498 537 IPR001680 GO:0005515
Sto6g4027 1054 SMART WD40_4 26 66 IPR001680 GO:0005515
Sto6g4027 1054 SUPERFAMILY Soluble quinoprotein glucose dehydrogenase 506 809 IPR011041 -
Sto6g4027 1054 Gene3D - 555 678 IPR015943 GO:0005515
Sto6g4027 1054 CDD R-SNARE_STXBP5_6 989 1046 - -
Sto6g4027 1054 Gene3D - 38 316 IPR015943 GO:0005515
Sto6g4027 1054 Gene3D - 324 548 IPR015943 GO:0005515
Sto6g4027 1054 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 1 1053 - -
Sto6g4027 1054 SUPERFAMILY WD40 repeat-like 44 609 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4027 Sto-Chr6 44002382 44011408 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4027 - - gmx:100811900 1583.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4027 6 44002382 44011408 Sto6g4027 6 44002382 44011408 ECH