Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g4023 ATGTACGGATCGAGAGGGGCAATGTTGGGAAGTGGGGGGGTTTCAGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCCAATCCATACTTCGCAGTGAGCAGCGGAGCAGGCAGCTTTCAACCTTATCGATATGCTGGTGGCTTCCAGCCCCCTCCTTTTCCCGTGGTTCGCCTCAGGGGGCTCCCCTTCAACTGCACTGATATTGACGTTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTATTGCTGGTCAACAAGAGTGGAAGATTCTCAGGGGAGGCCTTTGTTGTCTTAGCTGGAGCAATGCAAGTTGAGTTTGCTTTACAAAGAGATCGGCAGAACATGGGGCGCAGATATGTGGAAGTTTTTAGGTGTAAGAGGCAGGATTATTACAATGCAGTGGCTGCCGAGGTAAACTATGAAGGAATATATGATACGGACTACCACGGAAGCCCTCCATCTCGTTCCAAGAGGTTCAGTGATAAGGACCAAATGGAATACACAGAGATATTGAAAATGCGTGGACTTCCATTCACTGTGTCAAAATCTGACATCGTTGATTTTTTTGGAGATTTTAAGCTGGTAGAAGATAAGATACATATTGCATGTCGCCCAGATGGGAAAGCTACGGGAGAAGCATATGTAGAGTTTGTATCTGCAGAAGAGGCGAAGAGAGCAATGTGcaaggataaaatgactatAGGATCAAGGTATGTGGAGTTGTTTCCATCTACAGCAGATGAAGCTAGACGGGCAGAGTCGAGATCAAGGCAGTAA 792 0.4583 MYGSRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGAGSFQPYRYAGGFQPPPFPVVRLRGLPFNCTDIDVFKFFAGLDIVDVLLVNKSGRFSGEAFVVLAGAMQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDTDYHGSPPSRSKRFSDKDQMEYTEILKMRGLPFTVSKSDIVDFFGDFKLVEDKIHIACRPDGKATGEAYVEFVSAEEAKRAMCKDKMTIGSRYVELFPSTADEARRAESRSRQ 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g4023 263 SUPERFAMILY RNA-binding domain, RBD 51 137 IPR035979 GO:0003676
Sto6g4023 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 244 IPR000504 GO:0003723
Sto6g4023 263 SMART rrm1_1 175 247 IPR000504 GO:0003723
Sto6g4023 263 SMART rrm1_1 59 128 IPR000504 GO:0003723
Sto6g4023 263 Gene3D - 57 141 IPR012677 -
Sto6g4023 263 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 1 263 - -
Sto6g4023 263 SUPERFAMILY RNA-binding domain, RBD 173 260 IPR035979 GO:0003676
Sto6g4023 263 CDD RRM_hnRNPH_ESRPs_RBM12_like 175 247 - -
Sto6g4023 263 Gene3D - 158 263 IPR012677 -
Sto6g4023 263 CDD RRM_hnRNPH_ESRPs_RBM12_like 59 128 - -
Sto6g4023 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 251 IPR000504 GO:0003723
Sto6g4023 263 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g4023 Sto-Chr6 43984544 43986159 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g4023 K12898 - tcc:18598896 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g4023 6 43984544 43986159 Sto6g4023 6 43984544 43986159 ECH