Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3946 ATGTTCCAAGACATGTGGAATGCTCCCCCTGGTTTCAGACCCTCCAAGTCTGCTCCTTCTTCTCCGGCGAAGCCTCTTGGGGTTCTCAGAACGAGATCCGAATCCTTCCACGTAACCCACAAGGTCCCTGTGGGAGACACTCCTTATGTCAGAGCCAAAAACGTTCAGTTGGTGGATAAGGACCCAGAGAGAGCAATTCCTCTATTTTGGGCAGCCattaatgcgggagacagagtGGACAGTGCTTTGAAAGATATGGCCATAGTGATGAAGCAGCAGAATCGGGCTGAAGAGGCCATTGAAGCTATTAAATCACTTAGAAGCAAGTGTTCTGATCAAGCCCAAGAGTCTCTTGATAATATCCTCTTAGATCTTTACAAGAGATGTGGGAGACTTGATGACCAAATAGTCCTGCTGAAGCATAAACTGTTCCTAATCCAACAAGGCTTGGCTTTCAATGGCAAGAGAACCAAAACCGCCAGATCTCAGGGGAAAAAGTTTCAGGTGTCTGTGGAGCAAGAAGCCACGAGATTGCTGGGAAACTTAGCGTGGGCACTGATGCAGCAGAACAACTACATTGAAGCAGAAGATGCTTACCGAAGGGCGCTTTCAATTGCTCCAGATAACAACAAGATGTGCAATCTGGGTATATGCTTGATGAAGCAAGGCAGAATTTCTGAGGCTAAAGAGACTCTGTGTCGAGTGAAGCCTGCAGTTGCAGATGGCCCAAGAGGTTCAGACTCTCACTTGAAAGCCTACGAGAGGGCACAGCAAATGCTGAAGGATCTAGAATCAGAAATGATGAACAAGGGAGGGGTGGATAGGGTTGAACAGAGCAGGCTCTTCGAAGCTTTTCTGGGCTCTTCATCAATCTGGCAGCCTCAGCCTTGTAAGGACCATCATACAAATTCCAGTACAAATCCCAATACCAATTACATCAAAACCCCAGAAGATTTCGCTGATGAGAACATGAATTCGAATATATTACCCAATTTCATAGCTCCACAGCAGAAAGGTGTGCCATTGGGGAACTCGCTTAATGTTGCAGCACCACCATTTTATGCATCAAAAACTGGGAATCATCATCCGCATCAATTCGCGGAGAGACTTAAGAGAACACGGTCTGGAAATGCAGCTGGATCGATGAGAGTGAACGAGGTCGGGGAGATTAACAATAAGTTGTTGCATAAGGAACCAGAGGTGCCAGAGAACAACAAGACAAGAAGGCTTTCATCGGAGAAGGATGAGTCCGACATGTTGTTGCCAAACAACAAGGACTTTGAAGATGCCATTCTTGCGGCGATTCTGGGACCTACAGATGAGTCGGATAAAGCCGTTGACACAAACGCTTCGGGGATCTTCCAGAGGAAGGTTGATAAGAGGCTTAAGGTTTTCCAAGATATTACACTATCTTTGAGTCCAAGGGCTTGA 1431 0.4584 MFQDMWNAPPGFRPSKSAPSSPAKPLGVLRTRSESFHVTHKVPVGDTPYVRAKNVQLVDKDPERAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSKCSDQAQESLDNILLDLYKRCGRLDDQIVLLKHKLFLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLAWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRISEAKETLCRVKPAVADGPRGSDSHLKAYERAQQMLKDLESEMMNKGGVDRVEQSRLFEAFLGSSSIWQPQPCKDHHTNSSTNPNTNYIKTPEDFADENMNSNILPNFIAPQQKGVPLGNSLNVAAPPFYASKTGNHHPHQFAERLKRTRSGNAAGSMRVNEVGEINNKLLHKEPEVPENNKTRRLSSEKDESDMLLPNNKDFEDAILAAILGPTDESDKAVDTNASGIFQRKVDKRLKVFQDITLSLSPRA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3946 476 Coils Coil 246 266 - -
Sto6g3946 476 Pfam Tetratricopeptide repeat 178 209 IPR001440 GO:0005515
Sto6g3946 476 Gene3D Tetratricopeptide repeat domain 49 271 IPR011990 GO:0005515
Sto6g3946 476 MobiDBLite consensus disorder prediction 1 26 - -
Sto6g3946 476 SUPERFAMILY TPR-like 59 232 IPR011990 GO:0005515
Sto6g3946 476 MobiDBLite consensus disorder prediction 398 421 - -
Sto6g3946 476 Coils Coil 89 116 - -
Sto6g3946 476 SMART tpr_5 176 209 IPR019734 GO:0005515
Sto6g3946 476 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 473 IPR044961 -
Sto6g3946 476 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
Sto6g3946 476 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3946 Sto-Chr6 43553158 43554889 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3946 - - adu:107476429 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3946 6 43553158 43554889 Sto6g3946 6 43553158 43554889 ECH