Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3919 ATGGCGTCCGATAACAAGTCCGGCGGATCTGGATCTGGATCCGGATCTACTCCCACCGCCGCTAATGGCGACGTGGCTCCTCCGCGCAAGGTAGCATTGATCACTGGCATCACCGGCCAAGATGGTTCCTACCTCACTGAATTCCTCCTCAACAAAGGCTACGACGTCCATGGCCTCATTCGGCGCTCCTCCAACTTCAACACCCAACGGATCAATCACATCTACATCGACCCCCACAACGCCCACAAGGCTCGAATGAAGCTTCACTACGCGGATCTCTCCGATGCCTCTTCCCTCCGTCGATGGCTCGATACCATCCTCCCCGATGAGGTCTACAATCTCGCTGCTCAGTCTCACGTCGCTGTTTCCTTCGAGATCCCCGATTACACAGCCGATGTTGTCGCCACCGGTGCGCTCCGACTTTTGGAGGCTGTTCGCTCCCACATCGCCGCCACCGGTCGCAGCCATATACGATATTACCAGGCCGGATCATCCGAAATGTTCGGGTCTACTCCACCTCCGCAATCGGAGACCACGCCATTTCACCCTCGGTCTCCTTACGCGGCGTCGAAATGCGCTGCGCACTGGTACACCGTTAATTATCGCGAGGCCTATGGGCTCTATGCCTGCAATGGGATTCTCTTCAATCACGAATCGCCGAGGCGAGGTGAGAATTTCGTGACCCGGAAGATCACGCGGGCCGTGGGGCGAATCAAGATCGGGTTGCAGCGCAAATTGTTCTTGGGAAATTTGCAGGCCTCCAGGGATTGGGGTTTTGCAGGGGATTATGTGGAGGCTATGTGGATGATGCTGCAGCAAGAGAAGCCCGATGATTACGTTGTGGCCACGGAGGAATCCCATACAGTGGAAGAGTTCTTGGAGGTTGCATTTGGGTCCGTGGGTTTGAATTGGAGGGATCATGTGGAGATTGACAAGAGGTACTTTAGGCCTGCGGAGGTTGATAATCTCAAGGGGGATTCAAGCAAGGCCAGGAAAGTGCTTGGATGGAAGCCCAAGGTGGGATTTGAGCAGTTGGTGAAGATGATGGTGGATGAGGACATTGAATTGGCCAAGAGGGAGAAGGTGCTTGTTGATGCTGGCTACATGGATGCTCAGCAACAACCTTGA 1128 0.5479 MASDNKSGGSGSGSGSTPTAANGDVAPPRKVALITGITGQDGSYLTEFLLNKGYDVHGLIRRSSNFNTQRINHIYIDPHNAHKARMKLHYADLSDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIAATGRSHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLYACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQRKLFLGNLQASRDWGFAGDYVEAMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGSVGLNWRDHVEIDKRYFRPAEVDNLKGDSSKARKVLGWKPKVGFEQLVKMMVDEDIELAKREKVLVDAGYMDAQQQP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3919 375 Hamap GDP-mannose 4,6-dehydratase [gmd]. 30 359 IPR006368 GO:0008446|GO:0019673
Sto6g3919 375 Gene3D - 223 349 - -
Sto6g3919 375 PANTHER GDP-MANNOSE 4,6-DEHYDRATASE 23 370 IPR006368 GO:0008446|GO:0019673
Sto6g3919 375 MobiDBLite consensus disorder prediction 1 25 - -
Sto6g3919 375 PANTHER GDP-MANNOSE 4,6 DEHYDRATASE 1-LIKE 23 370 - -
Sto6g3919 375 Gene3D - 33 339 - -
Sto6g3919 375 MobiDBLite consensus disorder prediction 1 21 - -
Sto6g3919 375 Pfam GDP-mannose 4,6 dehydratase 33 349 IPR016040 -
Sto6g3919 375 CDD GDP_MD_SDR_e 31 355 - -
Sto6g3919 375 TIGRFAM gmd: GDP-mannose 4,6-dehydratase 30 356 IPR006368 GO:0008446|GO:0019673
Sto6g3919 375 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 355 IPR036291 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3919 31 215 Miscellaneous Gene Families AT4G12250 29.016 2.10e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3919 K01711 - cit:102613014 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3919 6 43358735 43359862 Sto6g3919 6 43358735 43359862 ECH