Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3914 ATGGCTCGTACCAAGCAAACCGCTCGCAAATCTACGGGTGGAAAGGCTCCCAGGAAGCAACTCGCCACCaagGCTGCAAGAAAGTCTGCTCCCACCACTGGTGGAGTAAAGAAGCCCCATAGATACCGCCCTGGAACTGTTGCACTTCGTGAGATTCGTAAGTATCAAAAAAGTACTGAGCTCTTGATTAGGAAGCTTCCCTTTCAAAGACTTGTTCGTGAAATTGCCCAAGACTTTAAGACTGATTTGAGGTTCCAGAGCCATGCTGTTCTTGCACTTCAGGAAGCGGCAGAGGCCTATCTTGTTGGATTATTTGAGGACACTAATCTCTGTGCTATTCATGCTAAGCGAGTGACCATTATGCCCAAGGATATCCAGCTTGCCAGACATGCACTGTGGAGATTGTTCTTTGAAAAACCAGAAGACTTGAAGGTTCTACCTTTGCCGAATAAAGTTGTGTCTGCTCTTGGCGGTAGGCTAAGAACCTTGGTGTTTTTTCATGTGAAAGTGCTTGTATTGTTGTCGCTCATCGTTATGTACTGTACCAAAGAAGTGGCAGCTACTTTCATGTCTCCTATTTCAGTTGTCTGA 591 0.4569 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARHALWRLFFEKPEDLKVLPLPNKVVSALGGRLRTLVFFHVKVLVLLSLIVMYCTKEVAATFMSPISVV 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3914 196 SUPERFAMILY Histone-fold 2 134 IPR009072 GO:0046982
Sto6g3914 196 ProSitePatterns Histone H3 signature 2. 67 75 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto6g3914 196 Pfam Core histone H2A/H2B/H3/H4 1 130 IPR007125 GO:0003677
Sto6g3914 196 MobiDBLite consensus disorder prediction 1 42 - -
Sto6g3914 196 PANTHER - 1 130 - -
Sto6g3914 196 SMART h35 34 138 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto6g3914 196 Gene3D Histone, subunit A 2 132 IPR009072 GO:0046982
Sto6g3914 196 ProSitePatterns Histone H3 signature 1. 15 21 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto6g3914 196 PRINTS Histone H3 signature 3 17 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto6g3914 196 PRINTS Histone H3 signature 17 31 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto6g3914 196 PRINTS Histone H3 signature 34 55 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto6g3914 196 PRINTS Histone H3 signature 58 75 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto6g3914 196 PRINTS Histone H3 signature 80 98 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto6g3914 196 PRINTS Histone H3 signature 98 114 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto6g3914 196 PRINTS Histone H3 signature 114 135 IPR000164 GO:0000786|GO:0003677|GO:0030527
Sto6g3914 196 PANTHER HISTONE H3 1 130 IPR000164 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3914 Sto-Chr6 43335781 43338065 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3914 K11253 - sspl:121753728 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3914 6 43335781 43338065 Sto6g3914 6 43335781 43338065 ECH
Sto6g3914 6 43335781 43338065 Sto11g1498 11 14207551 14208906 ECH