Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3838 ATGGCTGCCGCAAAATTATCACCATGCGTAGCCATGGCAGCAGCGGTGGCTACTATGTCCACACTCTCCAACAAGGCTTACGCCGATTCGTCTTTTAGGTTCCCTTTCTTCTCGTCTTCATCATCGTCTAGTTCGGCTCCCCAGGGAGACCAGACTTCTGATACCAAGTCAGAATCTCAAGCTCCCGATGAACCCAAAAGGTCAGGTTTTGATCCGGAATCGTTAGAAAGAGGTGCTAAAGCTCTTCGCGAAATCAATAGTTCTCCCAATGCTAAACagGTTTTTGATTTAATGAGGAAGCAGGAACAAACACGCCTTGCTGAGTTAGATGCTGAGAAAGTTCATTACGAATTAATTCAGTCTCAAATTGATATTGAAAGGCAGCGGAAGCTGGCTGAAGAACAACGGAATCTTATACAAGAGCAAGCACAGAGGAAGGCCCAGGGGCTACGATATGAAGATGAATTGGCAAGGAAAAGAATGCAGGCAGATCATGAAGCTCAGAGGCATCATAATGTTGAATTGGTGAAGATGCAAGAGGAGTCTTCTGTTAGAAAAGAACAGGCAAGGCGGGCTACTGAAGAACAGATTCAAGCTCAGCAGCGTCaaactgagagagagagagctgaaatagaaagggaaacCATAAGAGTTAAGGCCATGGCGGAGGCAGAGGGTCGAGCCCACGAAGCAAAACTCACTGAGGAGCATAAAAGGAGGATGCTTATAGAACGGATGCAAGGTGAAAGAGACAAATGGCTTGCTGCAATTAACACAACTTTTGGTCATATTGAAGGTGGTTTAAGGGCCTTATTGACTGATAGGGACAAATTGCTTATGACTGTTGGAGGAGCCACTGCATTAGCTGCTGGAGTATATACGACTAGAGAAGGTGCTAAAGTGACATGGGGCTATATTAATCGGATTTTGGGGCAGCCATCATTGATCCGGGAATCATCCATGGCAAAATTTCCAGGGTCAAGGATCATATCTCAAGCCAAaaacaaagttttaaattatagtaCAATGGCGAAGGCAGAACAACTTTCTGAGAGTAAAAATAGCCTTGGAAATGTAGTACTCCATCCATCATTGAAGAGAAGAATAGAGCATCTTGCCCGGGCTACATCAAATACCAAGGCCCACCAGGCACCGTTCCGTAACATGCTTTTCTATGGCCCTCCTGGGACTGGTAAAACCATGGTTGCAAGGGAAATAGCTAGAAAGTCGGGTTTAGATTATGCCATGATGACTGGAGGAGATGTTGCACCCCTGGGCCCACAGGCTGTTACCAAAATCCATGAGATATTTGATTGGGCTAAGAAATCTAGAAAAGGCTTACTGCTTTTTATTGATGAGGCAGATGCTTTCCTTTGCGAGCGTAACAGCTCACATATGAGCGAAGCTCAACGAAGTGCTCTAAACGCATTGCTCTTCAGAACTGGTGATCAGTCAAGAGACATAGTACTTGTCCTTGCCACAAACAGACCGGGTGATCTTGATAGCGCAGTTACCGATCGCATTGACGAAGTGATTGAATTCCCACTTCCCGGAGAGGAAGAACGTTTTCAGCTATTGAAACTGTATTTGAACAAATACCTTAGGGAAGACAATGACAGCTCATCCAAGCGGGGCTTCTTACTTAGCAAGCAACCCCAAAAAATTAGCATGAATGATATCTCTGAGGATGTGCTCAGAGAGGCTGCCAAGAAGACGGAGGGATTCTCTGGTCGTGAGATAGCTAAACTCATGGCTAGCGTCCAAGCAGCTGTTTATGGGCGCCCAGACTGCACTTTGGATTCCCAATTGTTGAGAGAAATTGTAGATTATAAGGTCAACGAACATCATCAACGGATAAAACTAGCAGCTGAAGCTGCTCTGCCTGACATCGCTTCAGCTTAG 1902 0.4427 MAAAKLSPCVAMAAAVATMSTLSNKAYADSSFRFPFFSSSSSSSSAPQGDQTSDTKSESQAPDEPKRSGFDPESLERGAKALREINSSPNAKQVFDLMRKQEQTRLAELDAEKVHYELIQSQIDIERQRKLAEEQRNLIQEQAQRKAQGLRYEDELARKRMQADHEAQRHHNVELVKMQEESSVRKEQARRATEEQIQAQQRQTERERAEIERETIRVKAMAEAEGRAHEAKLTEEHKRRMLIERMQGERDKWLAAINTTFGHIEGGLRALLTDRDKLLMTVGGATALAAGVYTTREGAKVTWGYINRILGQPSLIRESSMAKFPGSRIISQAKNKVLNYSTMAKAEQLSESKNSLGNVVLHPSLKRRIEHLARATSNTKAHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGPQAVTKIHEIFDWAKKSRKGLLLFIDEADAFLCERNSSHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVTDRIDEVIEFPLPGEEERFQLLKLYLNKYLREDNDSSSKRGFLLSKQPQKISMNDISEDVLREAAKKTEGFSGREIAKLMASVQAAVYGRPDCTLDSQLLREIVDYKVNEHHQRIKLAAEAALPDIASA 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3838 633 Pfam ATPase family AAA domain-containing protein 3, N-terminal 52 317 IPR021911 -
Sto6g3838 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 611 IPR027417 -
Sto6g3838 633 CDD AAA 381 516 - -
Sto6g3838 633 MobiDBLite consensus disorder prediction 38 56 - -
Sto6g3838 633 ProSitePatterns AAA-protein family signature. 488 507 IPR003960 GO:0005524|GO:0016887
Sto6g3838 633 MobiDBLite consensus disorder prediction 57 74 - -
Sto6g3838 633 Gene3D - 330 536 IPR027417 -
Sto6g3838 633 SMART AAA_5 385 518 IPR003593 -
Sto6g3838 633 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 626 - -
Sto6g3838 633 Coils Coil 183 217 - -
Sto6g3838 633 PANTHER PUTATIVE ATP-ASE 1 626 IPR039188 GO:0005739|GO:0007005
Sto6g3838 633 Pfam ATPase family associated with various cellular activities (AAA) 389 516 IPR003959 GO:0005524|GO:0016887
Sto6g3838 633 MobiDBLite consensus disorder prediction 38 74 - -
Sto6g3838 633 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3838 Sto-Chr6 42894626 42898736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3838 365 593 Miscellaneous Gene Families AT5G53170 28.992 4.07e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3838 K17681 - gmx:100777755 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3838 6 42894626 42898736 Sto6g3838 6 42894626 42898736 ECH