Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3822 ATGGTGCACAGCGCCTATGATTCTTTCGAGCTCCTTGGCAATTGCCCTTCTAAGATCGAAGCTATTGAATCTTACGGTTTAAAGCTGCTACTGGGCTGCTCCGATGGCTCCCTCCGTATATACGCTCCAGAATCATCCGATTCTGATGAGCTGCGGAAGGAAGCCTACGTGCTCGAAAGAAACTTGACTGGCTTCGCCAAGAAGCCCGTGGTATCAATGGAGGTCTTGGAATCTATGGAGCTGCTTCTATCACTTTCCGAATCTATTGCGTTTCATCGTCTTCCTAATTTTGAAACCATAGCAGTCATCACGAAGGCCAAGGGCGCCAATGTCTTCTGCTGGGATGACAAAAGAGGTTTCTTGTGCTTCGCGAGGCAAAAGAGGGTCTGTATTTTCAGACACGATGGGGGCAGAGGATTTGTGGAGGTGAAAGAATTTGGTGTTCCAGACGTGGTGAAATCGATGTCATGGTGTGGTGAAAATATATGTCTGGGGATTAGAAGAGAATATGTAATACTGAATGCCACAAATGGTGCGTTGTCTGAGGTATTTACTTCTGGGAGACTAGCGCCACCTTTAGTGGTCTCTCTTCCCTCAGGAGAACTTCTTCTTGGAAAGGAGAACATTGGTGTCTTTGTGGACCAAAACGGGAAACTTCTTCCAGAAGGCAGGATTTGTTGGTCAGAGGCCCCTGCAGAAGTTGTAATACAGAAACCGTATGGTATAGCTCTCCTGCCTAGATTTGTTGAGGTACGATCACTTCGAGATCCATATCCACTAATACAGACTGTTGTTCTTCGAAATGTTCGTCATCTCCGCCAAAGCAACAATTCTGTAATTATTTCATTAGATAATTCTGTTCACGGCCTCTTCCCTGTTCCTCTTGGAGCTCAGATTGTCCAATTAACTGCGTCTGGTAACTTTGAAGAAGCTCTGTCATTATGCAAACTCCTTCCACCTGAAGATTCAAATCTTCGTGCTGCAAAGGAGggttcaatccatataagATATGCTCACTATCTGTTTGAAAATGGAAGCTATGAGGAAGCAATGGAACACTTTCTTGCGTCTCAAGTAGATATAACTTATGTGCTTTCTCTGTATCCATCCATTATCCTTCCAAAGACAACTATTGTTCATGAGCCAGAGAAGCTGGTGGACATTGATGCTTCATATCTCTCCAGAGGTTCTTCAGGTCTGTCAGATGATATGGAACCTTTGCCGCCACAACATTTGTCTGAATCTGATGCAGCACTTGAATCCAAAAAGATAAGTCATAATATGCTTATGGCTCTCATAAAGTTTTTGCAGAAGAAGAGATACAGTGTTATTGAGAAAGCCACTGCTGAAGGAACTGAGGAGGTTGTATTAGATGCAGTTGGGGATAACATAACATCCTATAGCAGTAGTAGGTTCAAGAAGACGAACAAGGGACGTGGTAATGTTCCTGTTAGCTCAGGAGCTCGGGAGATGGCTTCAATATTGGATACTGCTCTTCTCCAAGCGTTGCTTCTTACTGGACAATCTTCCTCAGCTTTAGAACTACTGAGAGGTCTTAACTACTGTGATTTGAAGATATGTGAAGAGATACTTCGAAAAGGCAACAATAATGTTGCTTTATTAGAACTTTACAAGTGCAATTCAATGCACCGCGAGGCTCTTGAGCTTCTTCACCAATTGGTGGAAGAGTCAAAGTCAAACCCATCTGAGGTTACACATAGGTTCAAGCCTGAGGCAATTATTGAGTATCTCAAGCCTCTTTGTGGGTCAGACCCCATGCTTGTTCTGGAGTTCTCAATGCTTGTTCTTGAAAGCTGTCCATCACAAACTATTGAGCTCTTTCTGTCTGGAAACATTCCAGCAGATATGGTGAATTCCTATTTGAAGCAACATTCTCCAAATATGCAGGCTACTTACTTGGAACTCATGCTTGCAATGAATGAGAGTGCCATCTCTGGAAATTTGCAAAATGAAATGGTGCAAATCTATCTTTCCGAAGTACTTGAGTGGTATGCAGATTTGAATGCTCAACAGAAATGGGatgagaaagctttctccccaACAAGGAAGAAATTATTGACAGCTTTAGAGAGTATATCAGGATACAATCCAGAAGCTCTATTGAAACGTCTTCCACAAGATGCTTTATATGAAGAACGTGCTATATTGTTGGGAAAAATGAACCAGCATGAATTGGCACTTTCTTTATATGTCCACAAGCTCCATGTTCCAGAATTGGCATTGTCCTATTGTGATCGGGTGTATGATTCTACACATCATCCTTCAGTAAAATCTCCCAGCAACATATACCTAACTCTTCTGCAAATCTATTTAAATCCACAAAGGACAACCAAGAGCTTTGAAAAGAGAATCATGAATCTATTGTCCCCCCATAACACTAGCATTCCAAAGGTTAGCTCCATGACATCAGTAAAGTCTAGAGGAAGCAGAGGAAGTAAGAAAATTGCTGCAATAGAGGGTGCAGAGGACACAAAAGTTAGTTTGAGCAGCACTGACAGCAGCCGGAGtgatggtgatctggatgaattTAGTGAGGAAAGTGGTACGACTATCATGCTGGATGAGGTCCTTGATTTGTTGAGCCGCAGATGGGATAGAATAAATGGAGCTCAGGCCCTTAAACTTTTACCAAGAGAAACTAAACTACAGAACTTGCTTCCATTTCTTGGACCTCTTCTGCGAAAATCTAGTGAAATGTACCGCAACTGCTCAGTGATCAAGAGCTTGAGACAGAGTGAGAACCTTCAGGTGAAAGATGAACTCTACAGTCACAGGAAAGCAGCTGTGAAAATAACCGGTGACAGCATGTGTTCCCTTTGCCATAAGAAGTTAGGAACAAGTGTATTTGCGGTCTACCCCAATGGGAAAACTCTTGTGCACTTTGTCTGCTTCAGGGATTCTCAGAGCATGAAAGCTGTGGCCAAAGGTTCGCCATTAAGAAAGCGATTATAG 2973 0.4201 MVHSAYDSFELLGNCPSKIEAIESYGLKLLLGCSDGSLRIYAPESSDSDELRKEAYVLERNLTGFAKKPVVSMEVLESMELLLSLSESIAFHRLPNFETIAVITKAKGANVFCWDDKRGFLCFARQKRVCIFRHDGGRGFVEVKEFGVPDVVKSMSWCGENICLGIRREYVILNATNGALSEVFTSGRLAPPLVVSLPSGELLLGKENIGVFVDQNGKLLPEGRICWSEAPAEVVIQKPYGIALLPRFVEVRSLRDPYPLIQTVVLRNVRHLRQSNNSVIISLDNSVHGLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEDSNLRAAKEGSIHIRYAHYLFENGSYEEAMEHFLASQVDITYVLSLYPSIILPKTTIVHEPEKLVDIDASYLSRGSSGLSDDMEPLPPQHLSESDAALESKKISHNMLMALIKFLQKKRYSVIEKATAEGTEEVVLDAVGDNITSYSSSRFKKTNKGRGNVPVSSGAREMASILDTALLQALLLTGQSSSALELLRGLNYCDLKICEEILRKGNNNVALLELYKCNSMHREALELLHQLVEESKSNPSEVTHRFKPEAIIEYLKPLCGSDPMLVLEFSMLVLESCPSQTIELFLSGNIPADMVNSYLKQHSPNMQATYLELMLAMNESAISGNLQNEMVQIYLSEVLEWYADLNAQQKWDEKAFSPTRKKLLTALESISGYNPEALLKRLPQDALYEERAILLGKMNQHELALSLYVHKLHVPELALSYCDRVYDSTHHPSVKSPSNIYLTLLQIYLNPQRTTKSFEKRIMNLLSPHNTSIPKVSSMTSVKSRGSRGSKKIAAIEGAEDTKVSLSSTDSSRSDGDLDEFSEESGTTIMLDEVLDLLSRRWDRINGAQALKLLPRETKLQNLLPFLGPLLRKSSEMYRNCSVIKSLRQSENLQVKDELYSHRKAAVKITGDSMCSLCHKKLGTSVFAVYPNGKTLVHFVCFRDSQSMKAVAKGSPLRKRL 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3822 990 MobiDBLite consensus disorder prediction 831 851 - -
Sto6g3822 990 SUPERFAMILY WD40 repeat-like 25 169 IPR036322 GO:0005515
Sto6g3822 990 Pfam Vacuolar sorting protein 39 domain 2 864 972 IPR019453 -
Sto6g3822 990 PANTHER CNH DOMAIN CONTAINING 1 989 IPR032914 GO:0016192
Sto6g3822 990 Pfam CNH domain 28 272 IPR001180 -
Sto6g3822 990 ProSiteProfiles Citron homology (CNH) domain profile. 16 279 IPR001180 -
Sto6g3822 990 PANTHER VACUOLAR SORTING PROTEIN 39 1 989 - -
Sto6g3822 990 Pfam Vacuolar sorting protein 39 domain 1 495 603 IPR019452 -
Sto6g3822 990 Pfam Region in Clathrin and VPS 623 756 IPR000547 GO:0006886|GO:0016192
Sto6g3822 990 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 598 785 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3822 Sto-Chr6 42796542 42803250 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3822 K20183 - gmx:100805342 1608.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3822 6 42796542 42803250 Sto6g3822 6 42796542 42803250 ECH