Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3807 atgaagtgtCCGTACTGCGCGGCGGCGCAGGGGCGTAGCGCCACCACTAGCTCCGGCCGCTCGATAACGGAGTGCACATCTTGCGGCCGAGTTGTTGAAGAACGGCAATCGCATCCTCACCATCTCTTTCACGTCCGTGCCCAAGACAACCCTCTCTGTCTTGTCACTTCCGACCTCCCCTCCCTCCAACCCTTCCATCAAAACCACGATGACGATGACCCCTTCGAGCCCACCGGTTTCATCACTGCCTTCTCCACTTGGTCCCTCGAGCCCAGCCCTCTCTATCTGCAGTCATGCGTATCCTTCTCCGGCCACCTCGCCGAGCTTGAGAGGGCTCTCGAATCGTCctcgtcttcctcctcctcttcgacaccttcttcttcatcttcgtcGACGGTTGTGGTTGATAATTTGAGGGCCTACATGCAGATTATTGATGTAGCTTCAATACTTGGGTTGGACTATGATATTTCAGACCACGCATTTCAATTATTCAGGGATTGTTGTTCGGCTACATGTTTGAGAAACCGGAGCGTCGAAGCGCTTGCCACTGCAGCTCTTGTTCAGGCAATTCGAGAGGCTCAAGAGCCTAGAACCCTTCAGGAAATTTCAATTGCAGCCAACGTGCCACAAAAGGAAATTGGGAAATACATCAAGATATTAGGAGAGGCTTTGCAGCTAAGTCAACCTATTAACAGCAATTCCATATCAGTCCATATGCCTAGATTTTGTACACTTCTACAACTCAATAAATCTGCTCAGGAACTGGCCACTCACATAGGAGAGGTGGTGATCAACAAATGCTTCTGCACTCGCAGGAATCCTATAAGCATCTCGGCTGCTGCTATATATCTGGCTTGCCAACTTGAAGACAAACGCAAAACCCAGGCAGAAATTTGCAAGGTCACTGGTCTTACTGAAGTCACTCTCCGGAAAGTGTACAAGGAACTATTAGAGAATTGGGATGATTTGCTTCCCTCTAATTATACTCCGGCTGTTCCTCCAGAAAGAGCATTTCCAACGACTGTAATTGCTTCAGGTCGTTCGTCGGTTACTAAGGTTGATGCAATAGAGGTTAATTCTTCCTTGGACAGAGAAAAGTTACTAGAAATTAAACCTAGCAAACCGAATGAGGTTTCAGTCATGGTGCATCAGCTCAGAGGGAAGGATGATGCCGAAGGTAAAAATAATGCCCGTGCAATCCATTCCACACTTAATCAGCAGTCAAGTTTCTGGCAGTCCCAGCTTCCTATTGGAACAAGTAGTCTTAAAACTACAGGAGAGACAAATCAGAATGTTTTACAAGGAATGGACATTGATGGACTTAAGCATAACAACCTACAGTCCGAACAGAAGGTTGAAGACGCAGACTGTGTTAATACTTTTCAAAATCCAAACCAACTTATTAGTCCTTCTGTCCCGAATGCTAGCTCCTCTGTCATGAAGCCGTTTTCGGCTCCACCTTCATCTGGGGCTACAAATGTTTGA 1488 0.455 MKCPYCAAAQGRSATTSSGRSITECTSCGRVVEERQSHPHHLFHVRAQDNPLCLVTSDLPSLQPFHQNHDDDDPFEPTGFITAFSTWSLEPSPLYLQSCVSFSGHLAELERALESSSSSSSSSTPSSSSSSTVVVDNLRAYMQIIDVASILGLDYDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSSVTKVDAIEVNSSLDREKLLEIKPSKPNEVSVMVHQLRGKDDAEGKNNARAIHSTLNQQSSFWQSQLPIGTSSLKTTGETNQNVLQGMDIDGLKHNNLQSEQKVEDADCVNTFQNPNQLISPSVPNASSSVMKPFSAPPSSGATNV 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3807 495 Gene3D - 138 229 - -
Sto6g3807 495 CDD CYCLIN 240 318 IPR013763 -
Sto6g3807 495 CDD CYCLIN 140 221 IPR013763 -
Sto6g3807 495 PANTHER PLANT-SPECIFIC TFIIB-RELATED PROTEIN 1 1 492 - -
Sto6g3807 495 PRINTS Transcription initiation factor IIB signature 18 38 IPR000812 GO:0006352|GO:0070897
Sto6g3807 495 PRINTS Transcription initiation factor IIB signature 184 203 IPR000812 GO:0006352|GO:0070897
Sto6g3807 495 PRINTS Transcription initiation factor IIB signature 210 225 IPR000812 GO:0006352|GO:0070897
Sto6g3807 495 PRINTS Transcription initiation factor IIB signature 239 257 IPR000812 GO:0006352|GO:0070897
Sto6g3807 495 PRINTS Transcription initiation factor IIB signature 273 289 IPR000812 GO:0006352|GO:0070897
Sto6g3807 495 PRINTS Transcription initiation factor IIB signature 305 319 IPR000812 GO:0006352|GO:0070897
Sto6g3807 495 SUPERFAMILY Cyclin-like 236 334 IPR036915 -
Sto6g3807 495 Pfam Transcription factor TFIIB repeat 140 221 IPR013150 GO:0017025
Sto6g3807 495 Pfam Transcription factor TFIIB repeat 238 319 IPR013150 GO:0017025
Sto6g3807 495 Gene3D - 238 334 - -
Sto6g3807 495 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 492 IPR000812 GO:0006352|GO:0070897
Sto6g3807 495 SMART cyclin_7 238 319 IPR013763 -
Sto6g3807 495 SMART cyclin_7 142 223 IPR013763 -
Sto6g3807 495 MobiDBLite consensus disorder prediction 463 495 - -
Sto6g3807 495 SUPERFAMILY Cyclin-like 139 229 IPR036915 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3807 K03124 - gmx:102662353 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3807 6 42695089 42699492 Sto6g3807 6 42695089 42699492 ECH