Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3802 ATGTCGTTCAATGCTGCTATGATCCGCCATATCCGCCGGCATTCCACCGCCACTGACACTTCAATCTCGATCTCGAAAGCAAAATCCAAACTTCGGACTGAGTACGATCCCGACAAGGCTCTCGAAATATACTCCTCCGTTTCCAAAGACTACGCCTCCACTACATCATCCCGCTACGCACAGGATCTCACGGTAAGGCGTCTCGTCAAGTCTCACCGCTTTTCTGACGTCGAGAATTTCATTGAGTCCCATAAGAATGATCCCAAAATCACCCAGGAACCATTTATGTCTACCTTGATTCGTTCCTATGGTCTTGCAGGCATGTTTGACCATGCATTGAAAACCTATGATCAAATGGACGAATTGGGCACACCAAGATCTGCTTTTTCCTTCAACGCCCTCTTGTCTGCGTGCATTAATTCTAAGCTTTTTGATAAAGTGCCCCAACTGTTCGATGAAATTCCCAAGAAGTATGGTGTAGTGCCTGATGAAATTTCGTATGGTATTTTGGTGAAGTCATTTTGCGAATCGGGTAATCCTCAGAAGGCGCTTGAGCTTGTGAAAGAGGCAGAGGAGAAGGGCGTGGAGATAACCGTAATTACATATACTACGATACTGGATGGTTTGTACAGGAAGGGGAAAAGTGATGAAGCTGAGAAGTTGTGGAATGTAATGGATAAGAAAGGTTGTATTGATGCGGCATCATATAACGTTAGGCTTATGTTTTCGCAAGATGACCGGCCAGAAGAAGTAAATACTCTGATCGATGAAATGACCAAGGCTGGCTATCAACCTAACACTATCACTTACAATTACTTGATGACTTCCTATCTTAAGCGTGAGATGGTGGATGAAGCGAAGGCTGTTTTTAAGGGATTGCGTGAGAATGGGTGTAATCCCAATGCAGCAACTTTTAGAACTCTGGTATATCATTTGTGTAGAAATGGGTATTTTGAGGAGGCGTATAAGATTTTTAAGCAGAGTGTGAGGATGCATAAGATTCCAGATTTTAATACAACGAAGCATTTGGTGGAAGGGTTAGTgaagaatgaaaagaagaaagaggctAAAGGAGTGAGTCGAACTGTGAAGAAGAAGTTTCCTCCTAATTTGTTGAAAGCTTGGGCAAAGGTTGAGGAAAATCTTAATTTGACTTCCGGTGAAGCTGACTCTGTCGAGGCTGAAGCAGCCTCAGCTTAG 1200 0.4267 MSFNAAMIRHIRRHSTATDTSISISKAKSKLRTEYDPDKALEIYSSVSKDYASTTSSRYAQDLTVRRLVKSHRFSDVENFIESHKNDPKITQEPFMSTLIRSYGLAGMFDHALKTYDQMDELGTPRSAFSFNALLSACINSKLFDKVPQLFDEIPKKYGVVPDEISYGILVKSFCESGNPQKALELVKEAEEKGVEITVITYTTILDGLYRKGKSDEAEKLWNVMDKKGCIDAASYNVRLMFSQDDRPEEVNTLIDEMTKAGYQPNTITYNYLMTSYLKREMVDEAKAVFKGLRENGCNPNAATFRTLVYHLCRNGYFEEAYKIFKQSVRMHKIPDFNTTKHLVEGLVKNEKKKEAKGVSRTVKKKFPPNLLKAWAKVEENLNLTSGEADSVEAEAASA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3802 399 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Sto6g3802 399 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Sto6g3802 399 Pfam PPR repeat 97 123 IPR002885 -
Sto6g3802 399 TIGRFAM PPR: pentatricopeptide repeat domain 268 302 IPR002885 -
Sto6g3802 399 TIGRFAM PPR: pentatricopeptide repeat domain 200 230 IPR002885 -
Sto6g3802 399 TIGRFAM PPR: pentatricopeptide repeat domain 97 123 IPR002885 -
Sto6g3802 399 TIGRFAM PPR: pentatricopeptide repeat domain 165 198 IPR002885 -
Sto6g3802 399 TIGRFAM PPR: pentatricopeptide repeat domain 304 332 IPR002885 -
Sto6g3802 399 TIGRFAM PPR: pentatricopeptide repeat domain 129 164 IPR002885 -
Sto6g3802 399 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Sto6g3802 399 Gene3D Tetratricopeptide repeat domain 4 143 IPR011990 GO:0005515
Sto6g3802 399 Gene3D Tetratricopeptide repeat domain 242 384 IPR011990 GO:0005515
Sto6g3802 399 Gene3D Tetratricopeptide repeat domain 144 241 IPR011990 GO:0005515
Sto6g3802 399 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Sto6g3802 399 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 13 389 - -
Sto6g3802 399 Pfam PPR repeat family 128 175 IPR002885 -
Sto6g3802 399 Pfam PPR repeat family 265 314 IPR002885 -
Sto6g3802 399 Pfam PPR repeat family 198 238 IPR002885 -
Sto6g3802 399 PANTHER BNAA09G52830D PROTEIN 13 389 - -
Sto6g3802 399 SUPERFAMILY HCP-like 174 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3802 Sto-Chr6 42667835 42669034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3802 97 370 Miscellaneous Gene Families AT4G11690 22.383 2.57e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3802 - - jre:108995377 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3802 6 42667835 42669034 Sto6g3802 6 42667835 42669034 ECH