Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3495 ATGTCCGACGCCAGTGTAGCCGCCGTTGAGCGAAATAAGGAGGGGAAAGGGAGACGCGCCAGAAGCGCGATACGAGGGATTCGGATAGAAGCAAGAAAAGCGAAAGTGAACCATTCTCGACCTTTCAAAGCTCAGCTGGCAATTTTGAGAAACAATGACCAAAAATCCAATTTTGACGATTCTCTGCTCCTCCATTATCTATCTAAACAGTGGCATCTGGAAGCACGAAGCTTTCTTGAAAAATTCTGCCGGGTAGACATGCATAAGCGTGTTGTTCATTGGACTTCGTTGATTTCTAAGTATTCGCGAGAGGGTTATGTGGACGAGGCTCGAATGCTGTTTGACATTATGCCTCAGAGAAATTCCGTTACTTATAATGCAATGTTATCGGGATATCTGCAATCCGGGATGCTGAATGAAGCTTGTCAGTTCTTTAAAAAGATGCCTCATAAGAATGTTGTTTCGTGGACTTCAATGCTTAGTGGGTTGGCAGATGCAGGGAGGATTGAAGATGCAAGGAAACTGTTTGATTTAATGCCTGAGAAGAATGTTGTTTCCTGGAATTCATTGGTAGCGGGGTTGATTAGGAATGGAAACTTGGAGGAAGCAAGGCAGGTCTTTGACCAAACTCCAGAAAAAAATGTGGTTTCTTGGAATGTTATGGTTGCAGGTTACACCGAAAATGGTAGAATGGAAGAAGCAAGAGTTTTGTTTGACGGGATGAAATGTAGGAATGTAATTACTTGGACTAGCATGATATCTGGTTATTGTCGTGCGGGCAATGTGGAAGAGGCTTATTATTTATTCCAGACAATGCCGGAGAAAAATGTTGTTTCATGGACTGCCATGATTGGTGGGTTCACTTGGAATCGCTTACATGAAGAGGCCTTACTGCTTTTCCTAAGAATGAAATTTTCTGATTCAAAACCAAATGCTGAGACCTTCATTTCTCTTGCATATGCATGCgcgggtttgggtttgggttttcccTGTCTTGGCAAGCAGTTACATGCTCAGCTCATTATTAATGGCTGGAAGCATGATGATTATGACGGCAGGTTATGTAGATGTCTGATTCAGATGTACTCTGAATTGGGTCTTATGGACTTTGCACACAATATCTTTGAGAAAAACCCGAGTAACTGTGATAGTCAGTCTTTCAATTCTATGATCAATGGTTATATTCGGATTGGTCAGTTACATAAGGCTCAAGTTTTGTTTGACCAGGTACCCATCCGAAACAGAATTACATGGACTTGCATGATTACTGGCCATCTAGGTGCAGGAGAAGTATTAAAGGCGCGCAATCTGTTTAATAGCATGCCTGATAGAGATGCCATTGCATGGACTTCAATGATTTATGGGCATGTTCAAAATGAGCTTATTGCTGAAGCCATATGCTTATTCGCAGAAATGAGGGCTCAGGGTGTTTCACCTCTAAATTCTACATATTCTGTTCTTTTTGGAGCCATGGGTGCGATGGCATATCTTGATCAGGGACGGCAGTTACATGGTATGAAGCTAAAGacaatatatgaatatgatttgATTCTCGAGAACTCTTTAATTTCGATGTATGCAAAATCTGGGGAGATAGATGATGCATATAACATCTTCTCCAACATGACTTACCGGGACATAATTTCTTGGAACTCCATGATCATGGCTCTTTCAGATCATGGGAGGGCCAGTGAAACTCTCAAGGTGTATGAAACTATGATTGAACATGGGATTTACCCAGATTCTGTTACTTTTCTGGGTGTCCTGACAGCATGTGGTCATGCGGGGCTTGTTTCCAAAGGGTGGGAATTATTTAGTTCCATGAATAATACTTATAAGCTTCAACCTGGTTTGGAGCATTACATTAGTATGATCAATCTTCTGGGCCGAGCAGGAAGTATGAAGGATGCAGAAGAGTTTGTGTTGAGGCTACCTATTGAACCCAATCATGCCGTTTGGGGGGCACTGCTCGGGGTATGCGGGTTGAGAAAAACAGATGCAGATGTTGCCAGACATGCTGCCAAACGACTCCTTGAGTTGGATCCTTTTAATGCTGCAGGTCATGTGACCCTTTGTAACATTTATGCAGCTAGTGGTAGGCACAGTGATGAGACAAACTTGAGGAAAGAAATGAGTTTGAAAGGTGTGAGAAAGGCACCTGGATATAGCTGGATAAACTTGAAGGGGAGAGTCCATATTTTTTCTCTGGGAGATAGATTACATCCACAAGTGGAAGAGATGTTGCTGCTGTTGTCTGGAAATGAGGCAAATTTTATGAACCAAATGAATTGA 2292 0.4149 MSDASVAAVERNKEGKGRRARSAIRGIRIEARKAKVNHSRPFKAQLAILRNNDQKSNFDDSLLLHYLSKQWHLEARSFLEKFCRVDMHKRVVHWTSLISKYSREGYVDEARMLFDIMPQRNSVTYNAMLSGYLQSGMLNEACQFFKKMPHKNVVSWTSMLSGLADAGRIEDARKLFDLMPEKNVVSWNSLVAGLIRNGNLEEARQVFDQTPEKNVVSWNVMVAGYTENGRMEEARVLFDGMKCRNVITWTSMISGYCRAGNVEEAYYLFQTMPEKNVVSWTAMIGGFTWNRLHEEALLLFLRMKFSDSKPNAETFISLAYACAGLGLGFPCLGKQLHAQLIINGWKHDDYDGRLCRCLIQMYSELGLMDFAHNIFEKNPSNCDSQSFNSMINGYIRIGQLHKAQVLFDQVPIRNRITWTCMITGHLGAGEVLKARNLFNSMPDRDAIAWTSMIYGHVQNELIAEAICLFAEMRAQGVSPLNSTYSVLFGAMGAMAYLDQGRQLHGMKLKTIYEYDLILENSLISMYAKSGEIDDAYNIFSNMTYRDIISWNSMIMALSDHGRASETLKVYETMIEHGIYPDSVTFLGVLTACGHAGLVSKGWELFSSMNNTYKLQPGLEHYISMINLLGRAGSMKDAEEFVLRLPIEPNHAVWGALLGVCGLRKTDADVARHAAKRLLELDPFNAAGHVTLCNIYAASGRHSDETNLRKEMSLKGVRKAPGYSWINLKGRVHIFSLGDRLHPQVEEMLLLLSGNEANFMNQMN 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3495 763 MobiDBLite consensus disorder prediction 1 20 - -
Sto6g3495 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Sto6g3495 763 Gene3D Tetratricopeptide repeat domain 341 410 IPR011990 GO:0005515
Sto6g3495 763 Gene3D Tetratricopeptide repeat domain 411 499 IPR011990 GO:0005515
Sto6g3495 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Sto6g3495 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 546 580 IPR002885 -
Sto6g3495 763 Pfam PPR repeat 386 409 IPR002885 -
Sto6g3495 763 Pfam PPR repeat 520 545 IPR002885 -
Sto6g3495 763 Pfam PPR repeat 621 641 IPR002885 -
Sto6g3495 763 Pfam PPR repeat 154 184 IPR002885 -
Sto6g3495 763 Pfam PPR repeat 416 444 IPR002885 -
Sto6g3495 763 Pfam PPR repeat 185 214 IPR002885 -
Sto6g3495 763 PANTHER - 333 411 - -
Sto6g3495 763 PANTHER - 123 311 - -
Sto6g3495 763 PANTHER - 371 444 - -
Sto6g3495 763 PANTHER - 412 751 - -
Sto6g3495 763 PANTHER - 74 123 - -
Sto6g3495 763 Gene3D Tetratricopeptide repeat domain 517 735 IPR011990 GO:0005515
Sto6g3495 763 Gene3D Tetratricopeptide repeat domain 152 239 IPR011990 GO:0005515
Sto6g3495 763 Gene3D Tetratricopeptide repeat domain 57 151 IPR011990 GO:0005515
Sto6g3495 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 217 IPR002885 -
Sto6g3495 763 Gene3D Tetratricopeptide repeat domain 240 328 IPR011990 GO:0005515
Sto6g3495 763 SUPERFAMILY TPR-like 51 209 IPR011990 GO:0005515
Sto6g3495 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 120 IPR002885 -
Sto6g3495 763 TIGRFAM PPR: pentatricopeptide repeat domain 448 479 IPR002885 -
Sto6g3495 763 TIGRFAM PPR: pentatricopeptide repeat domain 154 185 IPR002885 -
Sto6g3495 763 TIGRFAM PPR: pentatricopeptide repeat domain 247 278 IPR002885 -
Sto6g3495 763 TIGRFAM PPR: pentatricopeptide repeat domain 416 444 IPR002885 -
Sto6g3495 763 TIGRFAM PPR: pentatricopeptide repeat domain 93 120 IPR002885 -
Sto6g3495 763 TIGRFAM PPR: pentatricopeptide repeat domain 548 582 IPR002885 -
Sto6g3495 763 TIGRFAM PPR: pentatricopeptide repeat domain 123 153 IPR002885 -
Sto6g3495 763 TIGRFAM PPR: pentatricopeptide repeat domain 216 245 IPR002885 -
Sto6g3495 763 TIGRFAM PPR: pentatricopeptide repeat domain 185 213 IPR002885 -
Sto6g3495 763 Pfam E motif 666 726 IPR046848 -
Sto6g3495 763 PANTHER OS01G0913400 PROTEIN-RELATED 412 751 - -
Sto6g3495 763 PANTHER OS01G0913400 PROTEIN-RELATED 74 123 - -
Sto6g3495 763 PANTHER OS01G0913400 PROTEIN-RELATED 333 411 - -
Sto6g3495 763 PANTHER OS01G0913400 PROTEIN-RELATED 371 444 - -
Sto6g3495 763 PANTHER OS01G0913400 PROTEIN-RELATED 123 311 - -
Sto6g3495 763 Pfam PPR repeat family 546 592 IPR002885 -
Sto6g3495 763 Pfam PPR repeat family 275 322 IPR002885 -
Sto6g3495 763 Pfam PPR repeat family 445 490 IPR002885 -
Sto6g3495 763 Pfam PPR repeat family 121 153 IPR002885 -
Sto6g3495 763 Pfam PPR repeat 244 272 IPR002885 -
Sto6g3495 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Sto6g3495 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Sto6g3495 763 SUPERFAMILY TPR-like 177 701 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3495 Sto-Chr6 40571914 40574518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3495 41 747 Glycoside Hydrolase AT3G49170 28.627 3.32e-83 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3495 - - gmx:102669560 1023.46