Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3491 ATGGCGCCGGTTTCAGCGTTGGCCAAGTACAAGCTGGTCTTCTTGGGCGACCAGTCCGTAGGCAAGACCAGCATAATTACTCGCTTCATGTACGATAAATTCGATAATACCTATCAGGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGAACTGTTAGACTGCAATTATGGGATACGGCTGGACAAGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTATATGATGTTGCAAgtCGGCAAACTTTTTTGAACACATCAAAGTGGATTGAAGAGGTGAGGACTGAGAGAGGGAGCGATGTCATTATTGTCCTTGTTGGGAACAAAACTGATCTGGTCGAAAAGAGGCAAGTCTCTATAGAAGAAGGGGAAGCAAAAGCGAACGAACTGAATGCCCTCTTTCGAAAAATTGCAGCTGCCTTACCTGGAATGGAAACACTATCTTCTACAAAACAAGAAGACATGGTTGATGTTAACTTAAAGTCTTCCAGTGCCAGCGCTCAATCTCAACCTCAGTCAAGCGGATGTGCTTGTTGA 579 0.4231 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKANELNALFRKIAAALPGMETLSSTKQEDMVDVNLKSSSASAQSQPQSSGCAC 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3491 192 ProSiteProfiles small GTPase Rho family profile. 3 181 - -
Sto6g3491 192 PRINTS Transforming protein P21 ras signature 10 31 - -
Sto6g3491 192 PRINTS Transforming protein P21 ras signature 33 49 - -
Sto6g3491 192 PRINTS Transforming protein P21 ras signature 51 73 - -
Sto6g3491 192 PRINTS Transforming protein P21 ras signature 113 126 - -
Sto6g3491 192 ProSiteProfiles small GTPase Rab1 family profile. 5 192 - -
Sto6g3491 192 ProSiteProfiles small GTPase Ras family profile. 5 192 IPR001806 GO:0003924|GO:0005525
Sto6g3491 192 Pfam Ras family 11 154 IPR001806 GO:0003924|GO:0005525
Sto6g3491 192 SMART ran_sub_2 15 192 - -
Sto6g3491 192 SMART rho_sub_3 12 157 IPR001806 GO:0003924|GO:0005525
Sto6g3491 192 PANTHER GTP-BINDING PROTEIN RAB6 1 192 - -
Sto6g3491 192 Gene3D - 6 189 IPR027417 -
Sto6g3491 192 SMART rab_sub_5 10 158 - -
Sto6g3491 192 SMART ras_sub_4 7 175 - -
Sto6g3491 192 TIGRFAM small_GTP: small GTP-binding protein domain 9 160 IPR005225 GO:0005525
Sto6g3491 192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 151 IPR027417 -
Sto6g3491 192 PANTHER DRAB5-RELATED 1 192 - -
Sto6g3491 192 CDD Rab6 10 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3491 Sto-Chr6 40545830 40548856 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3491 K07893 - cpap:110814766 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3491 6 40545830 40548856 Sto11g1850 11 17226979 17230968 CCT
Sto6g3491 6 40545830 40548856 Sto6g3491 6 40545830 40548856 ECH