Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3489 ATGGACTCACAACAGAGCAATCTATTCGAGACCGCTTCGCAACCCGACACTGGCAACGACGCATACACTTTCCTCGAATTCAACACCCAGGGGGAGGATTTCGACTACCCCGAGTTCCGTGACTCGATTAGGTCACCGGTGTCCTGGCCCACTCCGTCCGATTCGCTGGTTGACCCCACGGAACGTGGTGGTGGAGGTGGGGCGGGTTCTGATCACCAGTCCGATGCCTCGCCCGTTTCAGCAGCTCCAGGAAGCGCCACTAAAAGCCGGCCAGCTGGGTCGGGCAGCAGCGGGAACAGCCAGATGGTTGATACCCTGGCTGCTGGGATGAGTGGGTTGAATTTTGAGGACACTGGGGATGATGACAATTATGATTTTGGTAAAGGAGATTTCACTGAACATGCTTGCCGGTATTGTGGGGTATCAAACCCAGCATGTGTTGTGAGGTGTAATGTGCCTTCATGTCGCAAATGGTTTTGTAATTCGCGCGGAAACACGTCGGGTTCACATATCGTAAATCACCTGGTTCGAGCAAAGCACAAGGAAGTCTGTCTTCACAAAGATAGTCCTTTGGGAGAAACAATTCTTGAATGCTACAACTGTGGGTGTCGTAATGTGTTTCTTCTTGGATTTATTTCTGCCAAGACAGAAAGTGTAGTAGTTCTTCTATGTCGTGAACCTTGTTTGAGTGTTAATGCATTGAAAGATATGAATTGGGATCTCAGTCAATGGTGTCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCGGAACAGGAGCAGTTGAGGGCTCGCCAAATAAGTGCACAGCAAATTAATAAGGTGGAGGAGCTTTGGAAAACAAATCCTGATGCTTCTCTTGAGGACCTTGAGAAACCTGGTGTAGATGATGAACCTCAGCCTGTGGCTATAAAATATGAAGATGCATATCAGTATCAAAATGTTTTTGCACCACTCATTAAGCTTGAAGCTGATTATGATAAGATGATGAAAGAATCTCAAAGCAAGGACAATGTTACCATTCGATGGGATATTGGTCTTAACAAGAAGCGCATTGCATACTTTGTATTCCCAAAGGAAGATAATGAGTTGCGTCTTGTACCCGGTGATGAATTACGGTTGCGTTATTCTGGCGATGCTGCACATCCAGCATGGCAATCAGTGGGGCATGTGATTAAGTTAACTGCACAAGAGGAAGTTGCACTTGAGCTTCGTGCAAATCAGGGGGTTCCAGTTGACGTAAACCATGGTTTCAGTGTTGATTTTGTCTGGAAGAGTACAAGCTTTGATAGGATGCAGGGAGCTATGAAAACCTTTGCTGTAGATGAGACCAGTGTAAGCGGGTATATTTACCATCACTTACTGGGTCATGAAGTTGAGGTTCAGATGGTGCGTAATGCATTACCTCGTCGCTTTGGGGCACCTGGGCTTCCGGAGCTCAATGCATCTCAAGTTTTTGCAGTTAAGAGTGTTCTTCAGAGGCCGATTAGTTTGATCCAAGGTCCTCCTGGAACTGGTAAGACTGTAACTTCTGCAGCAATTGTATATCACATGGCAAAACAAGGTCAGGGACAGGTTTTGGTTTGTGCACCTAGTAATGTGGCTGTAGATCAGCTTGCTGAAAAGATAAGTGCTACTGGATTGAAGGTTGTTAGGCTTTGTGCAAAGTCAAGGGAAGCTGTGAGTTCTCCTGTTGAGCACTTAACACTTCATTACCAGGTTAGAAATCTTGACACATCTGACAAGAGTGAACTTCACAAGTTACAACAGCTGAAAGATGAACAAGGAGAACTTTCCAGTAGTGATGAGAAAAAGTACAAAGCACTTAAGCGAGCAACAGAGAGGGAGATTTCTCAGAGTGCTGATGTGATCTGTTGCACATGTGTTGGCGCTGGAGATCCTCGGCTGGCAAATTTTAGGTTCCGTCAGGTGCTTATTGATGAGTCTACTCAAGCAACAGAACCCGAATGCCTCATTCCTTTGGTTCTTGGGGTCAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAGCTCGGTCCAGTCATTATGTGCAAGAAAGCTGCTCGTGCTGGGCTTGCACAGTCACTTTTTGAGCGCCTTGTTCTACTCGGTGTTAAACCAATTAGATTGCAGGTTCAATACCGTATGCATCCATCTCTCTCAGAATTTCCTTCAAATAGCTTTTATGAAGGCACTCTACAAAACGGAGTTACTGTTAATGAAAGGCAATTGTCAGGAATTGATTTTCCGTGGCCTGTGCCTAATCGTCCCATGTTTTTTTATGTTCAGATGGGACAAGAAGAGATCAGTGCAAGTGGCACATCTTATTTAAATAGAACTGAGGCTGCAAATGTTGAAAAGATTGTAACTACCTTCTTGAGGAGTGGTGTAGTCCCTAGCCAGATTGGCGTGATAACACCTTATGAGGGACAAAGAGCTTATATTGTCAATTATATGTCAAGAAATGGTGCCCTCAGGCAGCAACTTTACAAGGAGATAGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAAAAAGACTACATCATTCTATCATGTGTAAGAAGTAATGAGCATCAGGGCATTGGATTTCTTAATGATCCTCGGAGGCTCAATGTTGCTTTAACCAGAGCTAGATATGGTATTGTTATTCTGGGAAACCCTAAAGTACTGAGCAAGCAGCCTCTGTGGAATGGCTTGTTGACACACTACAAGGAACATGAGTGCTTGGTTGAAGGGCCTCTAAATAATCTGAAGCAGAGTATGGTTCAGTTTCAGAAACCCAAGAAGATCTACAATGATAGAAGACTTTTTTATGGTGGTGGTCCTGGAGTTGTGGCCGGTGATAATTTTGGGTCAGTTGGCTCTGGCCCAACTTCAGATCGGAAGAGCAACCGGGGTAGGGGGTTCCATTGCCACCTTTTCATGGTGGCCCCCAATCTCAGCCATATGCTATCCCAACTCGTGGAGCTGTACATGGGCCTGTTGGGGCAGTCCCTCATGTACCAACTCCAGGGAGCCGTGGTTTTGGTGCTGGACGGGGATTTCTTGGGTGATGACTTCAAAAGCCAGGGATCTCATGTTCCTTATAATGTCACTGATTTCTCCACACAGGCTTCTCAGAGTGGATATGCTGTTGATTATGTTACGCAAGGAGCACAAGGTGGATTCCCTGGAAACTTTCTGAACCAGAGTACACAAGCTGGGTATTCACGTTTTGGTTCTGGAAACGATTTCATGTCTCAGGACTACATGACCCATGGATCACAAGGCCTTTTCACTCAGGTTGGCTTCAATGATCCCTTACAAGATGATGCGTCACAGAGTCAATTTGGTGTGGCCAATACCAACCCTCTTCAGTCTCAGGATCACAATGTTTTCATCTGTATTGAATCCTATGATCACATGACAAAATATTTTGGCTATGCCTATTATAAGTAA 3453 0.4526 MDSQQSNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDSIRSPVSWPTPSDSLVDPTERGGGGGAGSDHQSDASPVSAAPGSATKSRPAGSGSSGNSQMVDTLAAGMSGLNFEDTGDDDNYDFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQPVAIKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRNLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTVNERQLSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFYGGGPGVVAGDNFGSVGSGPTSDRKSNRGRGFHCHLFMVAPNLSHMLSQLVELYMGLLGQSLMYQLQGAVVLVLDGDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYVTQGAQGGFPGNFLNQSTQAGYSRFGSGNDFMSQDYMTHGSQGLFTQVGFNDPLQDDASQSQFGVANTNPLQSQDHNVFICIESYDHMTKYFGYAYYK 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3489 1150 MobiDBLite consensus disorder prediction 73 102 - -
Sto6g3489 1150 CDD SF1_C_Upf1 720 909 IPR041679 -
Sto6g3489 1150 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 110 996 - -
Sto6g3489 1150 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 493 625 IPR014001 -
Sto6g3489 1150 Gene3D - 570 622 - -
Sto6g3489 1150 Pfam AAA domain 583 687 IPR041677 GO:0004386
Sto6g3489 1150 MobiDBLite consensus disorder prediction 1 102 - -
Sto6g3489 1150 Gene3D - 340 428 - -
Sto6g3489 1150 Pfam Type III restriction enzyme, res subunit 490 560 IPR006935 GO:0003677|GO:0005524|GO:0016787
Sto6g3489 1150 CDD ZBD_UPF1-like 135 257 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Sto6g3489 1150 Pfam RNA helicase (UPF2 interacting domain) 134 287 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Sto6g3489 1150 CDD 1B_UPF1-like 340 427 IPR040812 -
Sto6g3489 1150 PANTHER DNA2/NAM7 HELICASE FAMILY 110 996 IPR045055 -
Sto6g3489 1150 MobiDBLite consensus disorder prediction 1 26 - -
Sto6g3489 1150 Pfam AAA domain 697 892 IPR041679 -
Sto6g3489 1150 CDD DEXXQc_UPF1 484 719 - -
Sto6g3489 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 915 IPR027417 -
Sto6g3489 1150 Pfam RNA helicase UPF1, 1B domain 339 428 IPR040812 -
Sto6g3489 1150 Gene3D - 448 718 IPR027417 -
Sto6g3489 1150 Gene3D - 719 930 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3489 Sto-Chr6 40518745 40533639 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3489 K14326 - gmx:100795594 1901.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3489 6 40518745 40533639 Sto6g3489 6 40518745 40533639 ECH