Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3474 ATGGCTTTAACACTTCGTTCTTCAATTTCTTTCACCAATCAGAAAGAAACCAAACCTTGCAAAACCTGCGATGACATAGTCTCTGCTTCATCAGTTTGTTTTGCAAAAACGAAGCCATCGTTCCAACGTCTGGGAGTGAGAGTGAAGAATTCAATGCAGGATGTGGCACATGATGATGCAAATtacaggaggaggaagaaggagaaAGGAAGGGAGGAGGAGGGTGATGGGAGGAGAGTGCCTGTGTATGTGATGCTGCCATTAGACACAGTGACGATGGAAGGGAGGTTGAATAAGGCAAGAGCCATGAATGCAAGTTTGATGGCACTCAAGAGCGCGGGAGTAGAAGGAGTGATGGTGGATGCTTGGTGGGGTTTGGTGGAAAAAGATGGCCCTTTCAGTTATAACTGGGATGCTTATCTTGAGCTTGTACATATGGTTCAAAAGCATGGCTTGAAGCTTCAGGTTGTTATGTCTTTCCATCAGTGTGGAGGAAATGTTGGAGACTCCTGCAGCATCCCTCTACCCCCATGGGTTATGGAAGAAATAAGCAAGAACCCAGACCTGATTTACACAGACAGATCAGGGAGGAGGAATCCAGAGTATATCTCATTAGGCTGCGATTCATTGCCTGTTCTAAAGGGAAGGACACCTGTTCAGGTGTATAGTGATTACATGAGGAGCTTCCGTGACACATTCAGAGACTACTTAGGCAGTGTAATCGTGGAAATTCAAGTGGGGATGGGTCCTTGTGGGGAGCTCAGGTATCCATCTTATCCAGAAAGCAATGGAACATGGAGGTTTCCTGGAATAGGAGAATTTCAATGCTATGACAAGTATATGAGAGCATCCTTGGAAGCTTCAGCAGAAGCCATTGGGAGGAAAGAATGGGGAAGAAGTGGACCCCATGATTCTGGAGAGTACAATCAATTTCCAGAGGATACTGGATTCTTCAAAAGGGATGGAACATGGAACTCTGAATATGGACACTTCTTCTTGGACTGGTACTCCAGCAAGCTGCTTCAACACGGTGACAGAATCCTTGCATCTGCTAAAACAATATTTCAAACTTGTGGGGTGAAACTATCTGCGAAAATTGCTGGAATCCATTGGCACTACAGAACCAGGTCTCATGCTTCTGAGCTAACTGCCGGCTACTACAACACACGATTCCGCGATGGCTATCTGCCAATAGCACGAGCGATGGCAAAACATGGGATTGTCTTCAACTTCACCTGCATGGAAATGAAAGACAGACAGCAACCAGAACATGCGAATTGCTCACCAGAAGGGTTAGTTCATCAGGTGAAGATGGCAACAAGTGCAGCTGGGGTAGAACTTGCTGGAGAAAATGCATTGGAGAGATATGATGCGGATGCATATGCTCAAGTTTTGGCAACGAGTAGATCAGACTCAGGCAATGGATTGGCTGCTTTTACGTATCTAAGGATGAATAAAAGGTTGTTCGATGGCGATAATTGGAGGCACCTAGTGGACTTCGTAAGAAGCATGTCCGAGGGTGGTCGGAGACACAGGCTTCCAGATTGTGATTCTAATGGCACAGATCTTTACGTCGGACATATCAAAGGAACTAAGAAGAAGCAAGCTCAAGAGGCTGCTCTTGTGTGA 1629 0.4512 MALTLRSSISFTNQKETKPCKTCDDIVSASSVCFAKTKPSFQRLGVRVKNSMQDVAHDDANYRRRKKEKGREEEGDGRRVPVYVMLPLDTVTMEGRLNKARAMNASLMALKSAGVEGVMVDAWWGLVEKDGPFSYNWDAYLELVHMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVMEEISKNPDLIYTDRSGRRNPEYISLGCDSLPVLKGRTPVQVYSDYMRSFRDTFRDYLGSVIVEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGRKEWGRSGPHDSGEYNQFPEDTGFFKRDGTWNSEYGHFFLDWYSSKLLQHGDRILASAKTIFQTCGVKLSAKIAGIHWHYRTRSHASELTAGYYNTRFRDGYLPIARAMAKHGIVFNFTCMEMKDRQQPEHANCSPEGLVHQVKMATSAAGVELAGENALERYDADAYAQVLATSRSDSGNGLAAFTYLRMNKRLFDGDNWRHLVDFVRSMSEGGRRHRLPDCDSNGTDLYVGHIKGTKKKQAQEAALV 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3474 542 PANTHER - 1 541 IPR001554 GO:0000272|GO:0016161
Sto6g3474 542 Pfam Glycosyl hydrolase family 14 83 500 IPR001554 GO:0000272|GO:0016161
Sto6g3474 542 SUPERFAMILY (Trans)glycosidases 79 508 IPR017853 -
Sto6g3474 542 ProSitePatterns Beta-amylase active site 1. 161 169 IPR018238 GO:0000272|GO:0016161
Sto6g3474 542 MobiDBLite consensus disorder prediction 57 76 - -
Sto6g3474 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 114 128 IPR001554 GO:0000272|GO:0016161
Sto6g3474 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 135 153 IPR001554 GO:0000272|GO:0016161
Sto6g3474 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 157 178 IPR001554 GO:0000272|GO:0016161
Sto6g3474 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 249 271 IPR001554 GO:0000272|GO:0016161
Sto6g3474 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 324 343 IPR001554 GO:0000272|GO:0016161
Sto6g3474 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 360 376 IPR001554 GO:0000272|GO:0016161
Sto6g3474 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 377 388 IPR001554 GO:0000272|GO:0016161
Sto6g3474 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 395 418 IPR001554 GO:0000272|GO:0016161
Sto6g3474 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 432 454 IPR001554 GO:0000272|GO:0016161
Sto6g3474 542 Gene3D Glycosidases 74 538 - -
Sto6g3474 542 PANTHER BETA-AMYLASE 3, CHLOROPLASTIC 1 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3474 Sto-Chr6 40368391 40370679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3474 1 542 Glycoside Hydrolase AT4G17090 68.297 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3474 K01177 - gmx:100818063 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3474 6 40368391 40370679 Sto6g3474 6 40368391 40370679 ECH