Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3471 ATGGATCCATTATCAGTAATTAGCGAGGAACTAGCGGACATCGACGGACAGATCAGTGACATTTTCCGTGCTTTATCAAATGGGTTTCAGAAACTGGAAAAGATTAAGGAATCAAATAGGCAGAGCAGGCAGTTGGAAGAACTTACCGATAAAATGCGAGATTGTAAGCGGCTTATAAAAGAGTTTGACGCACAAGTCAAGGCTCTAGAGGGCAGAAATGATAGAGAAACCAACAAAATGCTGAATGAGAAAAAGCAGTCCATGATCAAAGAGTTAAATTCATACGTTGCTCGTAAAAAACAATATGCTACAAATATTGAGAATAAGCGAATTGAGCTCTTTGAGGGGCCTAATGAAGGTTATGCAGAAGAAAATGTCTTGCTAGCTTCCTTGACGGTGAGGGGAATAAAATCATCATGCTTACCAAAGTATTCTATGTTGGGATATAATCATGCAATGACAAATCAACAGCTAATGGATAGTGGGAATCGGATGATGGACGAGACAGATCAAGCTATAGAGAGGGGAAAGAAGGTTGTTCTAGAGACAATAAATGTTGGAACAGAGACTGCAGCCGCTCTTAAGGCTCAGACGGAACAAATGAGCAGAGTCGTCAATGAGCTGGATTCTATCCAATTCTCCATAAAGAGATCCACTAAATTGGTGAAGGAAATCGGTAGGCAGGTTGCTACTGACAGGTGTATTATGGCATTACTTGTCCTTATTGTGATTGGAGTGATAGCTATCATTATTGTAAAGCTTGTGCACCCAAACAACAAGGACATACGCGATATTCCTGGACTAGCCCCTCCAGCCATGACCCGGAAGCTGCTTTGGAGTCATAGTTGA 849 0.4146 MDPLSVISEELADIDGQISDIFRALSNGFQKLEKIKESNRQSRQLEELTDKMRDCKRLIKEFDAQVKALEGRNDRETNKMLNEKKQSMIKELNSYVARKKQYATNIENKRIELFEGPNEGYAEENVLLASLTVRGIKSSCLPKYSMLGYNHAMTNQQLMDSGNRMMDETDQAIERGKKVVLETINVGTETAAALKAQTEQMSRVVNELDSIQFSIKRSTKLVKEIGRQVATDRCIMALLVLIVIGVIAIIIVKLVHPNNKDIRDIPGLAPPAMTRKLLWSHS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3471 282 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 163 225 IPR000727 -
Sto6g3471 282 Gene3D - 154 233 - -
Sto6g3471 282 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 151 271 - -
Sto6g3471 282 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 132 - -
Sto6g3471 282 CDD SNARE_SNAP25N_23N_29N_SEC9N 160 224 IPR044766 GO:0005484|GO:0031201
Sto6g3471 282 Coils Coil 38 86 - -
Sto6g3471 282 SUPERFAMILY SNARE fusion complex 153 226 - -
Sto6g3471 282 PANTHER NOVEL PLANT SNARE 11 1 132 - -
Sto6g3471 282 PANTHER NOVEL PLANT SNARE 11 151 271 - -
Sto6g3471 282 SMART tSNARE_6 158 225 IPR000727 -
Sto6g3471 282 Pfam Sec20 172 246 IPR005606 GO:0005484|GO:0006890
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3471 Sto-Chr6 40355708 40359722 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3471 K08494 - gmx:100786429 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3471 6 40355708 40359722 Sto6g3471 6 40355708 40359722 ECH