Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3466 CTGCAAAAATTTTCCACCTGTAAACAGATTGAAAAATTACCTTGGGAAGGTTCCTCCCATGAAATTCTGTTgatgaaacttgaaaattcttTGAAGAATCATCAAGTTCATGAAGCATGGGAATTCTTTCATGATTTTAAGAGCCTTTATGGCTATCCCACGGTTTGTCTAGTGAATCAGCTAATTGTTCAATTATCTTACTCATCCAATCATGTATGGTTGCGTAAAGCATGTGAGTTGACCTTGCAAATTGTTAAAGAGAAGTCAAACTTACTTCAGGTTGATACCTTAACTAAGCTTGCTCTCTCTCTAGCAAGGTTGCAAATGCCAGTCCCTGCCTCAATGATTCTCAGATTGATGCTGGAGAAAGATTGTGTACCCTCTATGAATTTGTTGTCCTTGATTTTTTTGCATATGGTAAAGACAGAAATTGGGGCGCACCTCGCATCCAATTATCTGGCTCAAGTCTGTGATTGTTTTAAGTGCCTAAATGACAAAAATGTTCACCAGGCTGTGCTGGTCAAGCCCAATACAATGGTTTTTAACCTTGTGCTTGATGCTTGTGTAAGATTTAAATTATCTTTGAAAGGTCGGTGCATTATGGAATTAATGGCACTGACAGGCACAGTGGGCGATGCACACTCAGTTGTCATTATTTCACAGATACTGGAGATGAATGGTTTGCGAGATGAAATGAAGGAAATAAAGGGCCACGTTGATGGAGTTTTAGCTCCTTACCTTAATCATTATCGTCAGTTCTATGATAGTTTGTTGAGTTTGCACTTCAAATTTAATGATATTGATGCAGCTGCTGAGCTTGTTTTGGATATGAATAGACACTATGATtatcatattaataaaacagATAGGAAACAATCACAAAAGCCTTGCCTTGTTGCAATTGGATCTCATCACCTCAAAACTGGATTGAGGGTACAGTTTGATCCTGAGCTGCTGCTGAAGGATTCTGTTCTTAAAGTGGAAGGAAGACAAGATCTTATTTTTTATAGGGATGGAAAACTTGTCCTTAGTAACAGAGCTCTCGCCAAGTTCATCAGTCGATACAAGAAAGATGGGAGGATTAGTGAACTGTCGAAATTTTTATTGAGCATTCAAAAGGTTCCTTGTTCATTAGCAGGATCCAGCTTGTGTTCTGATGTAATTGGTGCTTGCATTCAATTTGGCTGGCTTGAATCTGCTCATGATATTTTGGATGACATGGAAGCATCTGGGTCTCCGATGGGCTCAGATTCATATATTTCTCTTCTGTCAGCATATTATAAGGCAAAGATGCACAGAGAAGCAAAGGTGCTgctaaaacaaatgaaaaggGTTGGTTTGGATGAAAAATTCTCTGATGATAATACTAACAAACTTATCCTTGGTGCAGAAACATCAGATTCATTTGGTTTATCAGATTTGGCTATCACTTTGGCTCAAGTATTGAAAGAGGAAGAGGATACATATTCCCCTTTGGTATATGAGTTCAACTCTTCTATCTACTTTTTTAGCAAGGCAAGAATGATAGAAGATGTGTTGAAGGTATatagaagaatggaagaaaagaaTATTCAACCAACAATTCAAACTTTTGCTTATATGTTGCATGGATATTCATCTCTGGGTATGTATCGTGAGATCACAATTTTATGGGGAGACATTAAGAGATTCATGAGGAATGGCAATTTAAAGGTTAATAGAGATCTGTACGAGTTGCTACTGCTTAATTTTCTTCAAGGTGGTTATTTTGAGAGAGTGATGGAGGTCATCGGGCATATGAGAGACCAAAACATGTATACTGATAAGTGGATGTACAAAAGTAAGTTCCTAAGATTTCACAAGAATCTTTATAGGAGTTTAAAAGCATCTGATTCTAGAACAGAAGCACAAAGCAAACGGATTGAGTATGTTCAGGCATTTAGGAAGTGGGTGGGTATTGATTAG 1944 0.3657 LQKFSTCKQIEKLPWEGSSHEILLMKLENSLKNHQVHEAWEFFHDFKSLYGYPTVCLVNQLIVQLSYSSNHVWLRKACELTLQIVKEKSNLLQVDTLTKLALSLARLQMPVPASMILRLMLEKDCVPSMNLLSLIFLHMVKTEIGAHLASNYLAQVCDCFKCLNDKNVHQAVLVKPNTMVFNLVLDACVRFKLSLKGRCIMELMALTGTVGDAHSVVIISQILEMNGLRDEMKEIKGHVDGVLAPYLNHYRQFYDSLLSLHFKFNDIDAAAELVLDMNRHYDYHINKTDRKQSQKPCLVAIGSHHLKTGLRVQFDPELLLKDSVLKVEGRQDLIFYRDGKLVLSNRALAKFISRYKKDGRISELSKFLLSIQKVPCSLAGSSLCSDVIGACIQFGWLESAHDILDDMEASGSPMGSDSYISLLSAYYKAKMHREAKVLLKQMKRVGLDEKFSDDNTNKLILGAETSDSFGLSDLAITLAQVLKEEEDTYSPLVYEFNSSIYFFSKARMIEDVLKVYRRMEEKNIQPTIQTFAYMLHGYSSLGMYREITILWGDIKRFMRNGNLKVNRDLYELLLLNFLQGGYFERVMEVIGHMRDQNMYTDKWMYKSKFLRFHKNLYRSLKASDSRTEAQSKRIEYVQAFRKWVGID 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3466 647 Pfam Pentatricopeptide repeat domain 493 536 IPR002885 -
Sto6g3466 647 Gene3D Tetratricopeptide repeat domain 335 465 IPR011990 GO:0005515
Sto6g3466 647 Pfam PPR repeat 387 411 IPR002885 -
Sto6g3466 647 Pfam PPR repeat 418 446 IPR002885 -
Sto6g3466 647 Gene3D Tetratricopeptide repeat domain 20 309 IPR011990 GO:0005515
Sto6g3466 647 PANTHER BNAC05G43320D PROTEIN 2 647 - -
Sto6g3466 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Sto6g3466 647 TIGRFAM PPR: pentatricopeptide repeat domain 418 446 IPR002885 -
Sto6g3466 647 TIGRFAM PPR: pentatricopeptide repeat domain 500 527 IPR002885 -
Sto6g3466 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Sto6g3466 647 Gene3D Tetratricopeptide repeat domain 468 645 IPR011990 GO:0005515
Sto6g3466 647 PANTHER OS07G0495300 PROTEIN 2 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3466 Sto-Chr6 40320308 40322251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3466 357 605 Glycosyltransferase AT1G05670 22.709 2.06e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3466 - - gmx:100812849 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3466 6 40320308 40322251 Sto6g3466 6 40320308 40322251 ECH