Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3381 ATGCTTCTATTGCCTCTAAAACATTCCATCTCCCAAACTCAATTTAACAGTACCCACCACCTCCTCAAGTCCACCTCCTCTCGCTCCGCCGCTCGCTTCCACCACCAACGCCGTCTCACCCACCGTCATCAAGTCTCTCTTCCACTATCTCCCGGCAGCGATTATACTCTTTCCTTCAATCTGGGCTCTCACCCTCCTCAACCCATCACTCTCTATATGGACACCGGAAGCGACCTTGTTTGGTTCCCTTGTGCTCCTTTCGAGTGTATTCTCTGCGAAGGTAAGCCCAACCCTTCACTCTCCATCAAACCACCCAACATTTCCCGAAGCGCCGTCGTTTCATGTAAGTCCCCTGCATGTTCCGCAGCTCACACCTCTGTTTCTTCCTCTGATCTCTGCGCAATGGCTCGATGTCCCTTGGAATCCATCGAGACCTCCGATTGCTCTTCTTTCTCTTGCCCTCCTTTCTACTACGCTTACGCCGATGGAAGCTTAATCGCTCGCCTCTATCGCGATACCCTCTCTGTCTCACCATCCTCGACTTCTCCGCTTCTCAGAAACTTCACCTTCGGATGCGCCCACACCACACTCGGCGAGCCCACTGGAGTCGCCGGATTCGGCCGTGGCTTGCTTTCTCTCCCCGCACAGCTAGCTACCTTCTCTCCCCAGCTGGGCAACCAATTTTCCTACTGTTTGGTCTCTCACTCATTTGATAAAGAACGCGTGCGCCGTCCGAGTCCACTCATCATCGGCCGTTACGACGAGAAACAGAAGATTAATGGCGGCGAGGCAGCAGCGGAATTTGTGTACACATCAATGCTGGAAAACCCCAAGCATCCATACTTCTACTGTGTGGGGATGACGGCAGTCTCGGTGGGGAAGAAAACTATTCCGGCTCCGGCGATGCTGAGGAGGGTGGACAGCCGGGGGAATGGGGGAGTGGTGGTTGATTCGGGCACGACGTTCACGATGTTGCCGGCGAGGTTTTACGAGTCGATTGTGGAGGAGTTTGAGGGGCGAGTGGGTCGAATTCATGAGCGGGCGAGTGAGGTTGAAGACAAAACGGGGCTGGGTCCGTGTTATTACTTGCAGGAGGGGAAGGTTGACGTGGAGGTGCCGAGTGTGACGTTGCATTTTGTGGGGAATAATTCCAACGTGGTGTTACCTAGGAAGAATTACTTCTACGAGTTTTTGGACGGTGCTGATAAGAGGAGGGTGGGGTGCTTGATGCTGATGAACGGTGGAGATGAGGCAGAATCTAGCGAGGGACCCGGAGCCACGCTTGGGAATTACCAGCAGCAAGGGTTTGAGGTGGTTTATGATTTGGAGAATCAGCGCGTGGGTTTCGCTAGAAGACAATGCGCGTCGCTTTGGGATACACTCAACTCCAACTCCAACTAG 1401 0.5368 MLLLPLKHSISQTQFNSTHHLLKSTSSRSAARFHHQRRLTHRHQVSLPLSPGSDYTLSFNLGSHPPQPITLYMDTGSDLVWFPCAPFECILCEGKPNPSLSIKPPNISRSAVVSCKSPACSAAHTSVSSSDLCAMARCPLESIETSDCSSFSCPPFYYAYADGSLIARLYRDTLSVSPSSTSPLLRNFTFGCAHTTLGEPTGVAGFGRGLLSLPAQLATFSPQLGNQFSYCLVSHSFDKERVRRPSPLIIGRYDEKQKINGGEAAAEFVYTSMLENPKHPYFYCVGMTAVSVGKKTIPAPAMLRRVDSRGNGGVVVDSGTTFTMLPARFYESIVEEFEGRVGRIHERASEVEDKTGLGPCYYLQEGKVDVEVPSVTLHFVGNNSNVVLPRKNYFYEFLDGADKRRVGCLMLMNGGDEAESSEGPGATLGNYQQQGFEVVYDLENQRVGFARRQCASLWDTLNSNSN 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3381 466 CDD pepsin_A_like_plant 55 454 IPR034161 -
Sto6g3381 466 Pfam Xylanase inhibitor C-terminal 283 450 IPR032799 -
Sto6g3381 466 PANTHER BNAA01G17170D PROTEIN 2 459 - -
Sto6g3381 466 ProSiteProfiles Peptidase family A1 domain profile. 55 450 IPR033121 -
Sto6g3381 466 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 314 325 IPR001969 GO:0004190|GO:0006508
Sto6g3381 466 Pfam Xylanase inhibitor N-terminal 55 250 IPR032861 -
Sto6g3381 466 Gene3D Acid Proteases 42 251 IPR021109 -
Sto6g3381 466 SUPERFAMILY Acid proteases 50 459 IPR021109 -
Sto6g3381 466 PANTHER OS07G0603500 PROTEIN-RELATED 2 459 - -
Sto6g3381 466 Gene3D Acid Proteases 258 463 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3381 Sto-Chr6 39808487 39809887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3381 23 457 Miscellaneous Gene Families AT1G77480 25.708 1.67e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3381 - - jre:109011632 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3381 6 39808487 39809887 Sto6g3381 6 39808487 39809887 ECH