Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3333 ATGGCGGTTGCACCCTATACAACTGCCTCAACGCAGCGTCTtcaacctcctcctcctcctagTTGTGGGACAAAGCTCTATTCGGGATTGAAGCCTCAATCCGCAAGTCCTTTTGGAGCCGGTAAACCTAACCTCACCGCTGAGTTTTACGCAAAAGTTCATAAGAGTCTCCAATGCCGGTCTGGTAATCACAAAGCAGCAAGGGGACAAATTCAGATGATGCCCATAGGGACACCTAAAGTCCCCTACAGAACACCTGGCGAGGGTACCTGGCAGTGGGTTGATTTGTGGAATGCCCTTTATCGAGAACGTGTTATCTTCATTGGACAAGAAATAGATGAAGAATTTAGCAACCAAATCCTGGCAACTATGCTGTATCTTGACAGTATAGATAATTCCAAGAAGCTCTTTATGTACATTAATGGTCCTGGTGGGGATCTTACACCAAGCATGGCCATATATGACACCATGCAGAGCTTGAAAAGTCCAGTTTCCACCCATTGTGTTGGCTATGCCTATAATCTAGCAGCATTTCTTCTTGCAGCTGGGGAGAAGGGTGATCGCCTAGCAATGCCTCTTTCAAGAATTGCTCTCCAGTCTCCAGCAGGATCAGCTCGTGGTCAGGCTGATGACATTCGTAATGAAGCAAATGAGCTTCTTAGAATCAGAGATTACCTTTTCAGTGAGTTGTCTAAGAAAACAGGTCAGCCCGTTGAGAAGATAAACAAAGACTTGAGCCGGATGAAACGCTTCAATTCACAGGAGGCTCTTGAGTATGGGCTTATTGATCGTATTGTCAGGCCACCCCGCATTAAGGCTGATATGCCTCGCAAGGAAGCAGGAACAGGTCTTGGATATTGTTCTTCGCAGCTTCAATTTCTAGACCGTGAGAATGCTTTCTCATTGACATCGCTTGAGCTTGGAAGAAAACGTCAATAG 939 0.4483 MAVAPYTTASTQRLQPPPPPSCGTKLYSGLKPQSASPFGAGKPNLTAEFYAKVHKSLQCRSGNHKAARGQIQMMPIGTPKVPYRTPGEGTWQWVDLWNALYRERVIFIGQEIDEEFSNQILATMLYLDSIDNSKKLFMYINGPGGDLTPSMAIYDTMQSLKSPVSTHCVGYAYNLAAFLLAAGEKGDRLAMPLSRIALQSPAGSARGQADDIRNEANELLRIRDYLFSELSKKTGQPVEKINKDLSRMKRFNSQEALEYGLIDRIVRPPRIKADMPRKEAGTGLGYCSSQLQFLDRENAFSLTSLELGRKRQ 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3333 312 Pfam Clp protease 92 267 IPR023562 -
Sto6g3333 312 Gene3D - 72 272 - -
Sto6g3333 312 CDD S14_ClpP_2 95 265 IPR001907 GO:0004176|GO:0004252|GO:0006508
Sto6g3333 312 PRINTS Clp protease catalytic subunit P signature 95 110 IPR001907 GO:0004176|GO:0004252|GO:0006508
Sto6g3333 312 PRINTS Clp protease catalytic subunit P signature 135 155 IPR001907 GO:0004176|GO:0004252|GO:0006508
Sto6g3333 312 PRINTS Clp protease catalytic subunit P signature 166 183 IPR001907 GO:0004176|GO:0004252|GO:0006508
Sto6g3333 312 PRINTS Clp protease catalytic subunit P signature 187 206 IPR001907 GO:0004176|GO:0004252|GO:0006508
Sto6g3333 312 PRINTS Clp protease catalytic subunit P signature 244 263 IPR001907 GO:0004176|GO:0004252|GO:0006508
Sto6g3333 312 MobiDBLite consensus disorder prediction 1 21 - -
Sto6g3333 312 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 77 269 IPR001907 GO:0004176|GO:0004252|GO:0006508
Sto6g3333 312 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 2, CHLOROPLASTIC 5 279 - -
Sto6g3333 312 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 5 279 IPR023562 -
Sto6g3333 312 SUPERFAMILY ClpP/crotonase 88 270 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3333 Sto-Chr6 39455791 39458917 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3333 K01358 - gmx:100800113 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3333 6 39455791 39458917 Sto6g3333 6 39455791 39458917 ECH