Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3304 ATGGACGAATCCAGTACTGTTACATCGTTGAGTGGTCCATCGCCTCTCGGAATTTCTCCTCCCCATTCTTCTTCTCCGCTCAATTTACCGCCTGATGTGTCTCGAGCATCGTTTTCCCTTGACAATCTAACCCCATCGTCTTCTGCCTCGCGTCATGTCCACCGGATGATCAACTCCAATCATTATCAATCACCTTCCCGAACAATCTACTCCGATAGGTTCATACCCAGCAGATCTGGCTCTAAGTTCGCTCTCTTTGATATTCCGACGCCGACGAATTCTGCGGCGGAGGGACGTGAAGACAGTTCCAGCACCTACACCGCGCTTTTGCGTACTGCGTTGTTTGGACCTGATGCCGGCGTCGTTTCACCGGTCACTCCTGATAAAAGGAGCCCAGCTATGAACCCACCGAACCGAAATATATTCCGTTACAAAACCGAAACGCGCCAGTCAATGCACTCGCTTTCGCCGTTTATGTTCGACGATGTCGTTCCGGGTGCCAATCATAGTCCGGTTAAGGCTCCTCGGAAGGTTCCGCGATCACCTTATAAGGTTCTGGATGCTCCTGCGCTGCAAGACGATTTTTATCTGAATCTTGTCGATTGGTCTTCGCACAATGTATTGGCTGTCGGTTTGGGTAACTGTGTTTATTTGTGGAATGCTTGTAGCAGTAAGGTAACTAAATTATGCGACTTGGGAATCGATGACAGTGTTTGTTCAGTTGGCTGGGCTCATCATGGTACACTTCTTGCTGTTGGAACTAGCAATGGTAAAGTCCAGATATGGGATGCATCTCGATGCAAGAAGATGAGAACTATGGAGGGTCATCGTTTACGTGTTGGGGCCTTGGCCTGGAGCTCTTCTCTTTTGTCATCTGGCGGCCGGGATAAGAATATTTATCAAAGAGATACGCGTGCACAAGAAGATTTTGTCAGTAAATTGTCAGGGCACAAGTCTGAGGTTTGTGGACTGAAGTGGTCTTATGACAACCGTGAATTAGCATCTGGAGGAAATGACAACAGATTGTTTGTTTGGAATGCACACTCAACCCAGCCTGTCCTGAAGTACTGCGAGCATACCGCAGCTGTTAAAGCTATTGCATGGTCCCCTCATGTTCATGGACTTCTTGCGTCTGGGGGAGGAACCGCAGATCGATGTATTCGTTTCTGGAATACAACCACCAACTCACATTTAAGCTGTATGGACACTGGAAGTCAGGTTTGCAACCTTGTTTGGTCTAAAAATGTCAACGAACTCGTAAGCACACATGGCTACTCCCAGAATCAGATAATAGTTTGGAGATACCCCACCATGTCAAAGCTGGCAACTCTAACGGGACATACGTATAGAGTTCTTTATCTTGCCATCTCTCCCGATGGGCAGACAATTGTCACTGGAGCTGGAGATGAAACACTTAGGTTTTGGAATGTATTTCCCTCTCCTAAATCTCagAGTACTGACAGTGAAATTGGAGCATCGTCTCTTGGAAGAACTACTATTAGAAGCCAGGTTGGACAGTTATATGATTATGATAGCTTTAAAAATCTTATAGTGGAAGCTGACTCCTGGGTGACTATTGACATGATCAAAGATTTTAATTATGAGTCTAATCATCATCTTTCTCCTTTTGATTCACAAGTGCAGATAGGTTATGATGACGGGGAAGCTCCGGTGACGGTGGGATCAGGCTCACCGGAGGGAAGAAGCAACAGTCACAATCTCGTTTGCAAGGCCGTGGAGGAAACTCCTGATGACTTGGAGTTGGAGAAGCTTCTTGCGCATTCTCTTCGTGGGACCCATAAACCCACACCAGAGCCTCCTGTAACTCCGGATAGTTGTTCAACAAATTCCCATCCCCGTGAACAAACGCCTCCAATACCTATCCATTTCATGCATGTAAATAGATGGAGGGAAAGAAACAAGTACAGGAGAAACAAAAGTTTGGTTCTTGTTGGTGGTGGAACGTCTTCTTTGGGGAGAAACACAGAATTGGTGCTTGGAATAGGAAGGCTTGAGCTCAGAAGGGAGAACAGGAGCAGTTGA 2043 0.4655 MDESSTVTSLSGPSPLGISPPHSSSPLNLPPDVSRASFSLDNLTPSSSASRHVHRMINSNHYQSPSRTIYSDRFIPSRSGSKFALFDIPTPTNSAAEGREDSSSTYTALLRTALFGPDAGVVSPVTPDKRSPAMNPPNRNIFRYKTETRQSMHSLSPFMFDDVVPGANHSPVKAPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAHHGTLLAVGTSNGKVQIWDASRCKKMRTMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDTRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNAHSTQPVLKYCEHTAAVKAIAWSPHVHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQSTDSEIGASSLGRTTIRSQVGQLYDYDSFKNLIVEADSWVTIDMIKDFNYESNHHLSPFDSQVQIGYDDGEAPVTVGSGSPEGRSNSHNLVCKAVEETPDDLELEKLLAHSLRGTHKPTPEPPVTPDSCSTNSHPREQTPPIPIHFMHVNRWRERNKYRRNKSLVLVGGGTSSLGRNTELVLGIGRLELRRENRSS 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3304 680 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 346 - -
Sto6g3304 680 ProSitePatterns Trp-Asp (WD) repeats signature. 463 477 IPR019775 -
Sto6g3304 680 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 272 IPR001680 GO:0005515
Sto6g3304 680 Pfam Anaphase-promoting complex subunit 4 WD40 domain 233 287 IPR024977 -
Sto6g3304 680 MobiDBLite consensus disorder prediction 1 33 - -
Sto6g3304 680 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 444 477 - -
Sto6g3304 680 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 23 501 IPR033010 GO:0010997|GO:0097027|GO:1904668
Sto6g3304 680 SUPERFAMILY WD40 repeat-like 191 477 IPR036322 GO:0005515
Sto6g3304 680 SMART WD40_4 437 476 IPR001680 GO:0005515
Sto6g3304 680 SMART WD40_4 266 303 IPR001680 GO:0005515
Sto6g3304 680 SMART WD40_4 307 346 IPR001680 GO:0005515
Sto6g3304 680 SMART WD40_4 179 220 IPR001680 GO:0005515
Sto6g3304 680 SMART WD40_4 223 263 IPR001680 GO:0005515
Sto6g3304 680 SMART WD40_4 349 391 IPR001680 GO:0005515
Sto6g3304 680 MobiDBLite consensus disorder prediction 596 628 - -
Sto6g3304 680 Gene3D - 172 481 IPR015943 GO:0005515
Sto6g3304 680 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 355 IPR001680 GO:0005515
Sto6g3304 680 PANTHER PROTEIN FIZZY-RELATED 1 23 501 - -
Sto6g3304 680 ProSiteProfiles Trp-Asp (WD) repeats profile. 444 477 IPR001680 GO:0005515
Sto6g3304 680 Pfam WD domain, G-beta repeat 351 391 IPR001680 GO:0005515
Sto6g3304 680 Pfam WD domain, G-beta repeat 311 346 IPR001680 GO:0005515
Sto6g3304 680 Pfam WD domain, G-beta repeat 440 476 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3304 Sto-Chr6 39265365 39277188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3304 308 477 Miscellaneous Gene Families AT5G08390 22.807 1.73e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3304 K03364 - mnt:21405920 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3304 6 39265365 39277188 Sto6g3304 6 39265365 39277188 ECH