Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3294 ATGGATGATGACCTCTTTCACGAGCAGAAAGTGCCATCTGGTATGATAACGGGCTTAAAGTTGGACATTGTAACTGAGACAGATAGAGAGTATATATCGGCACTACAGATTAATGCAGTTGGGCAGGTCACTTGCTCTGATTTGGGTCTTCCAAATCCTTCTTGTGAGTGCTCCACATGTGGTTCTAAAGATAGGAAGTTCTGCGAAGGTCATTTTGGGGTTATCAAATTTCCTTTTCCTGTACTCCACCCGTATTTTCTATCAGAAATTGCAGAAATCTTGAACAAAATTTGCCCGGGATGTAAATCTATTCGGCAAgaattatggtttaagGGTGCTCATTCAAAATCAGGAAACAAGTCACCCAAAGGTTGCAAATACTGTGCTGGAAGTTCAACGGGATTGTATCCGACAATGAAATTCAAAGTTTCCTCCACTGATCTATTCAGAAGAACATCAATTATAGTGGAAATAAATGAGAGAAATCTAAGGAGGAAGAGAAATTTAGGGACATTATTGCCTGCTGATTATTGGGATTTTATTCCAGGAGATGCTCAACAAGAAGAAAGTTGTCTGAAATCAAATAGAAGGGTTTTATCACCTGCTCAGGTTGAGACATTGTTGAGTGATGTTGATCCAAGCTTTGTTGAAAAATTTGTTTCACGGAGTGATTTGGTTGCTCTCAGTAGCTTCCTAGTGACACCCAATAGTCATCGTGTGACAGATATTATGCATGCATCTTCTAATGAGAACCGATTGATTTTTGATGACAGGACCAGGGCTTACAAGAAACTGGTTGATTTCAGGGGTACAGCTAATGAGTTAACTTCTCGTGTTTTGGATTGCCTAAGGATTTCTAAGCTAAATCCTGATAAAACACCAGAGAATAGTTTTGCTGCTATTCAGCAGAAAAAGAATGCTGAAAATTCTTGCACCTCATCTGGTTTGAGATGGATGAAAGATGTGGTTCTTGGGAAGCGCAATGATCACTCATTCCGTACTGTTGTTGTTGGTGATCCCAATCTTGAGCTTAGCCAAATTGGTATACCTTGTCAAATTGCAGAAAGTTTGCAGGTTCCTGAGTACGTGAATAGGCAAAATAAGGAAAAGTTGGTTTCTTGCTGTGAGCTACTTTTACTAGAGAAGGGACATGTACGTGCCTCTAGGAAAGGTAAATCAATATTGCTGTATAAAAAGGAACAGCTCCAGATAGGGGACATAATTTATAGGCCTCTTAATGATGGTGATATGGTGTTGATAAATAGACCACCTTCAATACATCCACATTCCCTGATTGCTCTTTTTGTTAGGGTCCTTCCCATATCTTCTGTTGTATCTATTAACCCACTATGTTGCTCCCCATTGCGTGGGGATTTTGACGGTGATTGTGTTCATGGTTATATTCCACAATCTGTTGGTACAAGAGTTGAGCTTAATGAGCTTGTTGCTCTAGATAGGCAATTAATAAATGAGCAAAGTGGGAGAAATCTACTTTCACTTGGTCAGGATAGTTTAACTGCTGCTTATTTGCTTATGGAGGATGGGGTACTTTTAAACATTTACCAAATGCAGCAGCTTCAAATGTTTTGCCCCCATAATCTGAAAATGCCTGCGATAGTAAAAGCTTATTCAAGTAATGCTATGTTTTGGACTGGCATGCAATTATTCAGCATGCTGTTGCCTCCTGATTTTGACTATTCCTATCCTTCAAGTGGCATTTTTATTAGTAATGGGGAGTTTATATCTCAATCTGAGTCTTCTGGTTGGTTACGTGACTCTGACTGCAATATTTTTCAGAGTCTAGTGCAATGTTATCATGAGAAATCTCTAGGCTTCTTGTATGTTGCACAAACAGTTCTTTGTGAGTGGTTGTCTATgacagggtttagtgtttcactTTCAGACTTGTACCTTTCTTCTGATTTCTACTCACGTAAAAATATGATGGAGGAAATCTTCTATGGCTTGAAAGAAGCAGAATATGCATGCAACTTTAAACAGTTGTTAGTGGATCATTACAGGGATTTCCTTTCAGGAAATGGGGAAGAGAATGGAAGTTCTTTGGCTGTTGAAGCGGAGCATCTGAATTATGATAGGCAAATATCGGCAGCTCTCAGTCAAGGTTCGGTTGATGCATTTAGACAAGTTTATCGAGATATTCAAAGTTTAGCCTTTAAATATGGATCTAAGGACAATACTTTGCTTGTTATGTCTAAAGCTGGAAGCAAGGGTAATATACTGAAATTAGTGCAACATTCCTTGTGTCTCGGCTTGCAACATTCTTTGGTTCGCCTATCATTTAGAATTCCACATCAGCTCTCATGTGTTGCCTGGAATTGTCAAAAGGAACTTGATTCAATCCAACTGTGTTATGATACTCCTGAATCTTTTCAGTCTTACATACCATTTGCTGTGGTTGAAAACTCATTTCTGACAGGGTTGAATCCACTTGAATGTTTTGTTCATTCAGTTACAAGCCGGGATAGTTCCTTCAGTGACAATGCAGATCTTCCTGGAACTTTGACACGAAGACTTATGTTCTTCATGCGTGACCTGTACCTTGCATATGATGGAACAGTGAGAAGTTCGTATGGCAATCAACTTATTAAGTTCTCTTATGATACGGATGAGGAGTCATCTTCCAATATCTCTTGCCAAGAGTACACTATAGGTGGTCAACCAGTTGGAGCACTTTCTGCTTGTGCAATTTCTGAAGCTGCATACAGTGCTTTGGATCAACCAATTAGTCTACTTGAAACATCGCCTTTGCTGAACTTAAAAAATGTACTGGAGTGTGgttcaaagaaaaaaagtggTGACCAGACTGTGTCTTTGTTTTTGTCTGAGAAACTTAATAGACAGAGATATGGGTTTGAATATGGAGCCTTGGAAATTAAAGATCATTTGGAGAGACTGAAGTTTTCAGACATCGTTTCTACTGTCATGATAATATTCACCCCACAGAGATGTGGTCAAGTAAAATTGAGTCCTTGGGTTTGCCATTTTCATGTAAGCAAGGAAATTTTCCGGAAAAGGAAGTTAAAAGTGCATTCTGTCATTGACTCTCTCTCCCAGAGATGTGAATCCATTAGAACGGGATCAGAAATCAATCTTCCTAGTTTACAAATATCATGCAAGACTTGTTCTGTGGCTGACAATGATATTGAAGACACACATTGCATCACTGTCACAATTGTTGAAAACCCTAGTAAGCCTATACAACTGGATGCTGTTCGAGCCTCATTGATACCTTACATTCTAGGCACGGCAATAAAAGGACTTCCGGAGATCAAAAAGGTAGATATCTTATGGAATGATCGGTCAAAAGTATCAAAATCTAAGAGCGGTTCTTCTGGTGAGCTATATGTGAGGGTCACTGTGTCCTGTAACTGTGCCAGTGGAAGATTCTGGGGTGACCTTGTGAATCATTGCCTCCCAATAATGAATTTGATTGATTGGACACGTAGTCATCCAGAAAACATACGTAATCTCTGTTCAGCCTATGGAATTGATGCAGGGTGGAAATATTTTCTCCATAGTTTGGAATCTGCAATATCTGATACCGGCAAGTCAGTCCTTCCTAAGCATTTGCTCCTAGTTGCTAATAGTCTATCAGCTAGTGGAGAGTTTGTGGGATTGAATTCTAAAGGCATGGCAAGGCAAAGACAACATGCATCTGTGTCATCACCCTTTGTGCAAGCATGCTTTTCTAATCCTGGAAGTTGCTTTATTAAAGCTGCTAAAGCTGGAGTCAATGATGATCTCCGGGGGAGCCTAGATGCATTGGCTTGGGGAAACTGTCCTTCCATGGGGACAGGTGGGCAGTTTGATATAATATATTCTAATAAGGAACATGAACTTGCTAAGCCTGTAGATCTGTACAATCTGCTGGAAGCCAGTGCTCACAAGCTGGATGAAAAGGCTCAAAACTATTCGTCTGAAAAATGGAGTGATAGATATAAAAAGGGTGGTTATGCCTTGAAAGAGCTTAAAATCTTTAGAGAGTCAATAAGAAGTAAGCTGTCATTTAATGATATTCTGAAGCTGACTGATTCATCAAAGTGCATATTAAAGAAATATTCTATTGATCAGCAATTAAATGAGAAGGACAAGTCAACCATATTGAGGGCTTTGCGTTTTCATCCTCGTAGCAATGAAAAGGTTGGCACTGGAGCAAAGGACATAAACGTTGGACAACACCCCGAGCACAAGGATACTCGCTGCTTCTTTGTAGTACGGGATGACGGGACAGTTGAAGATTTTTCTTACCGTAAATGCATTCTTGGTGCTCTTGATATGATTGCACCAGCAAGAGCAAACCAGTTTCGGAAAAGGTGGAAGGTTGATAACTGA 4353 0.3928 MDDDLFHEQKVPSGMITGLKLDIVTETDREYISALQINAVGQVTCSDLGLPNPSCECSTCGSKDRKFCEGHFGVIKFPFPVLHPYFLSEIAEILNKICPGCKSIRQELWFKGAHSKSGNKSPKGCKYCAGSSTGLYPTMKFKVSSTDLFRRTSIIVEINERNLRRKRNLGTLLPADYWDFIPGDAQQEESCLKSNRRVLSPAQVETLLSDVDPSFVEKFVSRSDLVALSSFLVTPNSHRVTDIMHASSNENRLIFDDRTRAYKKLVDFRGTANELTSRVLDCLRISKLNPDKTPENSFAAIQQKKNAENSCTSSGLRWMKDVVLGKRNDHSFRTVVVGDPNLELSQIGIPCQIAESLQVPEYVNRQNKEKLVSCCELLLLEKGHVRASRKGKSILLYKKEQLQIGDIIYRPLNDGDMVLINRPPSIHPHSLIALFVRVLPISSVVSINPLCCSPLRGDFDGDCVHGYIPQSVGTRVELNELVALDRQLINEQSGRNLLSLGQDSLTAAYLLMEDGVLLNIYQMQQLQMFCPHNLKMPAIVKAYSSNAMFWTGMQLFSMLLPPDFDYSYPSSGIFISNGEFISQSESSGWLRDSDCNIFQSLVQCYHEKSLGFLYVAQTVLCEWLSMTGFSVSLSDLYLSSDFYSRKNMMEEIFYGLKEAEYACNFKQLLVDHYRDFLSGNGEENGSSLAVEAEHLNYDRQISAALSQGSVDAFRQVYRDIQSLAFKYGSKDNTLLVMSKAGSKGNILKLVQHSLCLGLQHSLVRLSFRIPHQLSCVAWNCQKELDSIQLCYDTPESFQSYIPFAVVENSFLTGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYLAYDGTVRSSYGNQLIKFSYDTDEESSSNISCQEYTIGGQPVGALSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKKSGDQTVSLFLSEKLNRQRYGFEYGALEIKDHLERLKFSDIVSTVMIIFTPQRCGQVKLSPWVCHFHVSKEIFRKRKLKVHSVIDSLSQRCESIRTGSEINLPSLQISCKTCSVADNDIEDTHCITVTIVENPSKPIQLDAVRASLIPYILGTAIKGLPEIKKVDILWNDRSKVSKSKSGSSGELYVRVTVSCNCASGRFWGDLVNHCLPIMNLIDWTRSHPENIRNLCSAYGIDAGWKYFLHSLESAISDTGKSVLPKHLLLVANSLSASGEFVGLNSKGMARQRQHASVSSPFVQACFSNPGSCFIKAAKAGVNDDLRGSLDALAWGNCPSMGTGGQFDIIYSNKEHELAKPVDLYNLLEASAHKLDEKAQNYSSEKWSDRYKKGGYALKELKIFRESIRSKLSFNDILKLTDSSKCILKKYSIDQQLNEKDKSTILRALRFHPRSNEKVGTGAKDINVGQHPEHKDTRCFFVVRDDGTVEDFSYRKCILGALDMIAPARANQFRKRWKVDN 1450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3294 1450 Gene3D - 670 814 IPR038120 -
Sto6g3294 1450 Gene3D RNA polymerase II, clamp domain 10 114 IPR044893 -
Sto6g3294 1450 PANTHER DNA-DIRECTED RNA POLYMERASE 1 1327 IPR045867 GO:0003899|GO:0006351
Sto6g3294 1450 Coils Coil 1294 1314 - -
Sto6g3294 1450 Gene3D - 1336 1429 - -
Sto6g3294 1450 CDD RNAP_IV_RPD1_N 25 861 IPR040403 -
Sto6g3294 1450 Gene3D - 321 491 - -
Sto6g3294 1450 Gene3D RNA polymerase ii 358 410 - -
Sto6g3294 1450 SMART rpolaneu7 224 512 IPR006592 GO:0003677|GO:0003899|GO:0006351
Sto6g3294 1450 Pfam RNA polymerase Rpb1, domain 2 325 482 IPR000722 GO:0003677|GO:0003899|GO:0006351
Sto6g3294 1450 Pfam RNA polymerase Rpb1, domain 4 714 768 IPR007083 GO:0003677|GO:0003899|GO:0006351
Sto6g3294 1450 Gene3D RNA polymerase Rpb1, domain 3 492 638 IPR042102 -
Sto6g3294 1450 Pfam Protein of unknown function (DUF3223) 1355 1427 - -
Sto6g3294 1450 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 14 1280 - -
Sto6g3294 1450 Pfam RNA polymerase Rpb1, domain 3 487 636 IPR007066 GO:0003677|GO:0003899|GO:0006351
Sto6g3294 1450 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 1 1327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3294 Sto-Chr6 39167670 39183024 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3294 K16250 - gmx:100796185 1950.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3294 6 39167670 39183024 Sto6g3294 6 39167670 39183024 ECH