LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto6g3197	ATGATGATGTCCGGGGAACAAGTAGAACCTCAATTGTTGTCTAAAATTGCCACTGGAGACGGACATGCAGAACACTCCCCATATTTTGATGGGTGGAAGGCTTATGAGAATGATCCATTTCACCCCACAGAAAATCTCAATGGGGTTATTCAGATGGGTCTCGCTGAAAATCAGCTCACTGCTGACCTAATTGAAGAATGGATAACGAACAATCCAGAAGCTTCCATTTGCACTCCAGAAGGAGTCAGAGACTTCAGGGCCTTGGCTAACTTCCAGGATTATCACGGTTTACCAGAGTTCAGAAATGCCGTGGCTAAATTCATGGCAAGAGCAAGAGGAAACAGAGTGAGATTCGACCCTGATCGTATAGTTATGAGCGGAGGAGCAACTGGAGCTCACGAGGTCACTGCCTTTTGTTTGGCAGATCCTGGTGATGCTTTTTTGGTACCCACTCCTTTCGATCGCGATCTGAGATGGAGAACGGGAGTCCAACTCGTTCCTGTGGTCTGCGAAAGCTCCAACAATTTCAAGCTAACAAGGACAGCATTAGAAGCAGCGTACGAGAAAGCCAAAGAGAACAACATAAGAGTAAAAGGCTTACTCATCACAAACCCATCGAACCCATTAGGCACTATAATGGACACTGAAACATTAACAAGTGTGGTTCATTTCATCAACGAAAAGCGAATCCACCTAATATGCGACGAAATCTACGCGGGCACAGTTTTCGGGGAGCCTGGTTTCACAAGCATCGCCGAGATCATACAAGAACACGACAACAACAATAAAGACCTCATCCACATTGTCTATAGCCTCTCCAAGGATCTGGGAGTCCCAGGTTTCAGAGTGGGCATAATCTATTCGTACAATGACTCTGTCGTGCAATGTGCTCGCAAGATGTCCAGCTTTGGATTGGTGTCCACGCAGACACAGCATCTTCTTGCTTCGATGCTATCCGATGAAGAgttcgtggatcggtttctctcGGAGAGTGCGAAGAGGCTTGCGAGGAGGTACAGAGTGTTCACGAGAGGGCTAGGTCAGGTGGGTATAAAGTGCTTGCAGAGTAATGCTGGTTTGTTTCTGTGGATGGATTTGCGTCGTCTTATGAAGAATCAAACGTGGGAGGCGGAGATGGAGTTGTGGAGGACTATTATTAATGAAGTGAAGATCAATGTTTCGCCTGGGTCTTCTTTTCATTGCTGTGAGGCAGGGTGGTTCAGGGTGTGTTATGCTAATATGGATGATTTGGCTGTGGAGGTTGCTTTGACGAGGATTCGTAGCTTTGTTAGACAAAACATGGAGGCTATGGTTCCTAAGAAGAGGCTTTGCTGGCAGAGTAGCTTGAAGTTGAGGCTAAGTTTTAAGACCAGAAATCTGGATGAGATTATTATGTCACCACATTCTCCCATGCCTCAATCGCCTTTGGTTCAAGCCACTATTTGA	1446	0.4544	MMMSGEQVEPQLLSKIATGDGHAEHSPYFDGWKAYENDPFHPTENLNGVIQMGLAENQLTADLIEEWITNNPEASICTPEGVRDFRALANFQDYHGLPEFRNAVAKFMARARGNRVRFDPDRIVMSGGATGAHEVTAFCLADPGDAFLVPTPFDRDLRWRTGVQLVPVVCESSNNFKLTRTALEAAYEKAKENNIRVKGLLITNPSNPLGTIMDTETLTSVVHFINEKRIHLICDEIYAGTVFGEPGFTSIAEIIQEHDNNNKDLIHIVYSLSKDLGVPGFRVGIIYSYNDSVVQCARKMSSFGLVSTQTQHLLASMLSDEEFVDRFLSESAKRLARRYRVFTRGLGQVGIKCLQSNAGLFLWMDLRRLMKNQTWEAEMELWRTIINEVKINVSPGSSFHCCEAGWFRVCYANMDDLAVEVALTRIRSFVRQNMEAMVPKKRLCWQSSLKLRLSFKTRNLDEIIMSPHSPMPQSPLVQATI	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto6g3197	481	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	52	78	-	-
	Sto6g3197	481	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	85	101	-	-
	Sto6g3197	481	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	122	142	-	-
	Sto6g3197	481	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	144	165	-	-
	Sto6g3197	481	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	194	218	-	-
	Sto6g3197	481	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	230	253	-	-
	Sto6g3197	481	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	265	289	-	-
	Sto6g3197	481	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	297	320	-	-
	Sto6g3197	481	PANTHER	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6	8	442	-	-
	Sto6g3197	481	Pfam	Aminotransferase class I and II	50	426	IPR004839	GO:0009058\|GO:0030170
	Sto6g3197	481	PANTHER	BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED	8	442	-	-
	Sto6g3197	481	Gene3D	Aspartate Aminotransferase, domain 1	38	425	IPR015422	GO:0003824
	Sto6g3197	481	CDD	AAT_like	90	427	-	-
	Sto6g3197	481	SUPERFAMILY	PLP-dependent transferases	24	432	IPR015424	-
	Sto6g3197	481	Gene3D	-	72	320	IPR015421	GO:0003824
	Sto6g3197	481	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	271	284	IPR004838	GO:0003824\|GO:0009058\|GO:0030170

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto6g3197	Sto-Chr6	38568511	38570240	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto6g3197	K20772		-	gmx:100037458	763.837

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto6g3197	6	38568511	38570240	Sto6g3197	6	38568511	38570240	ECH