Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3196 ATGGCAGCGTCTTCCTTTGCTGCCTCTTCTATCCCCTTCACAACAACCCCAACTCCCAGAATATCATTTGCTTCATCTTCCTTCTATCCTTCGTTTCCTCGCATAAATGCCATCCCGCGGAAATTTCTATTCAGAGCGACGACTTCATCTGCGCCCACAGTTTCGGCGACATCAACCACCTCCGTCCAAGTCAATGATTCACCCGCCTCAGCCACTCCCGCCAAGCCCTTACCCTTTCGGGTGGGTCATGGATTTGATCTCCATCGCTTAGAACCTGGTTACCCCTTAATTATCGGTGGAATTAATATACCTCACGAAAAAGGGTGCGAGGCACATTCCGATGGGGATGTTCTACTTCACTGTGTGGTAGATGCGATCTTGGGGGCGTTAGGTCTTCCCGATATAGGACAGATATTTCCGGATTCAGATCCCAAGTGGAAGGGTTGTGCATCCTCAGTTTTCATCAAAGAATCTGTGAGACTTATGCACGAAGCAGGATATGATATTGGAAATTTGGATGCGACATTGATACTACAAAGACCAAAGCTAAGCCCACACAAGGAGGCCATCAAGGCCAACTTGTCTGCACTGCTTGGAGTTGATACTTCTGTAGTAAATATTAAAGCAAAGACTCATGAAAAGGTTGATAGCCTTGGAGAAAATAGAAGTATAGCAGCTCACACTGTGGTTCTTCTGATGAAGAAGTAA 708 0.4633 MAASSFAASSIPFTTTPTPRISFASSSFYPSFPRINAIPRKFLFRATTSSAPTVSATSTTSVQVNDSPASATPAKPLPFRVGHGFDLHRLEPGYPLIIGGINIPHEKGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCASSVFIKESVRLMHEAGYDIGNLDATLILQRPKLSPHKEAIKANLSALLGVDTSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3196 235 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC 7 235 IPR003526 GO:0008685|GO:0016114
Sto6g3196 235 TIGRFAM ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 80 234 IPR003526 GO:0008685|GO:0016114
Sto6g3196 235 SUPERFAMILY IpsF-like 78 234 IPR036571 GO:0008685|GO:0016114
Sto6g3196 235 CDD MECDP_synthase 80 232 IPR003526 GO:0008685|GO:0016114
Sto6g3196 235 ProSitePatterns 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 113 128 IPR020555 GO:0008685
Sto6g3196 235 Hamap 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 79 234 IPR003526 GO:0008685|GO:0016114
Sto6g3196 235 Pfam YgbB family 79 232 IPR003526 GO:0008685|GO:0016114
Sto6g3196 235 Gene3D - 77 235 IPR036571 GO:0008685|GO:0016114
Sto6g3196 235 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE 7 235 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3196 K01770 - gmx:100306378 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3196 6 38559168 38560861 Sto6g3196 6 38559168 38560861 ECH