Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3122 ATGCTTCGGTTCTTGCTCGAAATCTTGCTTTGCTTCGCCGCCATGGCGAACTTGTTCAACTCTTCCGCGTTggctgaagtgttaacctgctCCAACATAGTGCCTATGAGGAACCGAGTTGATAAGATTTCCATAACGGACTTCGGTGGTGTCGGTGACGGAAGGACATTGAATACAAAGGCGTTTCGGGAGGCTACATATCGGATTCAACACCTCAACAGGCGAGGAGGCACACTTCTTTATATTCCTCCTGGGGTGTTCTTAACAGAGAGCTTTAATCTTACCAGTCACATGACCCTTTATCTTGCCCGTGGTGCTGTTATCAAAGCCACACAGATCACAGAGAACTGGCCTTTGATCGCACCCTTGCCATCTTACGGAAGAGGGAGAGAGCGCCCTGGAGGAAGGTACATTAGCTTTATCCATGGAGACGGAGTACATGATGTGATAATCACTGGTGAGAATGGGACAATTGATGGGCAAGGAGATGTGTGGTGGAACATGTGGAGGCAGAGAACCCTTCAATTTACCAGACCCAACCTTGTTGAGTTTGTGAATTCCGAACATATCATTATTTCGAATGTAATTTTCAAGAATTCTCCTTTTTGGAACATACACCCAGTTTACAGCAGCAATGTTGTCATTCGGTTCGTCACCATACTGGCCCCACATGACTCTCCTAACACGGATGGAATTGATCCAGATTCAAGTTCGAATGTGTGCATAGAGGACTCGTACATATCTTGTGGAGATGATGCTGTAGCTGTGAAGAGTGGGTGGGATGAATATGGGATTGCTTACGGTCGGCCCAGCTCCGACATCACCATCCGGCGGCTAACAGCATCGTCCCCCTTTGCTGGAATTGCAATTGGCAGTGAAACCTCTGGAGGGGTGGAGAACATACTTGCTGAACACATCAACCTCTTCAACATGGGAGTTGGCATCCACATAAAGACAAATAGTGGGAGGGGAGGGACCATAAGGAACATAACCATGTCTCATGTGTACATGGAGAATGCAAGGAAGGGAATCAAGATTTCAGGTAATGTTGGGGATCACCCTGACGACAAATTCAACCCCAATGCTCTCCCCATTGTCAAGGATATTACAATTAATAACGTTTGGGGAGTGAAGGTTCTGCAAGCAGGTTTGATACAAGGACTCAAAGATTCCCCTTTTACTGAAATTTGCCTTTCCGATATCAACCTTCATGGCTTGGCTGGACCTACATCTCCTCCTTGGAAGTGCTCTGATGTGTTTGGAGCAGCTCGTCAGGTAAGTCCATCGCCATGTTCAGAGCTTTCTAGCAACCAACCTGGATCATGTGCAAATTATTTCTGA 1341 0.4601 MLRFLLEILLCFAAMANLFNSSALAEVLTCSNIVPMRNRVDKISITDFGGVGDGRTLNTKAFREATYRIQHLNRRGGTLLYIPPGVFLTESFNLTSHMTLYLARGAVIKATQITENWPLIAPLPSYGRGRERPGGRYISFIHGDGVHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPNLVEFVNSEHIIISNVIFKNSPFWNIHPVYSSNVVIRFVTILAPHDSPNTDGIDPDSSSNVCIEDSYISCGDDAVAVKSGWDEYGIAYGRPSSDITIRRLTASSPFAGIAIGSETSGGVENILAEHINLFNMGVGIHIKTNSGRGGTIRNITMSHVYMENARKGIKISGNVGDHPDDKFNPNALPIVKDITINNVWGVKVLQAGLIQGLKDSPFTEICLSDINLHGLAGPTSPPWKCSDVFGAARQVSPSPCSELSSNQPGSCANYF 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3122 446 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 7 444 - -
Sto6g3122 446 Pfam Glycosyl hydrolases family 28 139 419 IPR000743 GO:0004650|GO:0005975
Sto6g3122 446 SUPERFAMILY Pectin lyase-like 39 434 IPR011050 -
Sto6g3122 446 Gene3D - 26 419 IPR012334 -
Sto6g3122 446 PANTHER PECTIN LYASE-RELATED 7 444 - -
Sto6g3122 446 SMART pbh1 210 236 IPR006626 -
Sto6g3122 446 SMART pbh1 237 258 IPR006626 -
Sto6g3122 446 SMART pbh1 271 292 IPR006626 -
Sto6g3122 446 SMART pbh1 298 319 IPR006626 -
Sto6g3122 446 SMART pbh1 327 348 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3122 Sto-Chr6 38076362 38079673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3122 1 436 Glycoside Hydrolase AT4G23820 73.349 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3122 - - gmx:100818820 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3122 6 38076362 38079673 Sto6g3122 6 38076362 38079673 ECH