Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3097 ATGGGATGCACTAGCTCCAAACAGCGTCCTAGGCGTGAAGATCCTGCAGTTCTTGCAACCCAAACTTGTTTTAATGCATCTGAAATTGAAGGACTGTATGAGTTGTTCAAGAAGTTAAGTAGTGCTGTGGTTGATGATGGGCTTATGACCAAAGAAGAGTTTCAACTGGGCATATTTGGAAATAGCAAGATACAGAATCTGTTCACAGACAGGGTGTTTCATTTATTCGACTCAAAAAAAGATGGAGTGATAGAATTTGGAGAGTTTGTTCGAGCTCTGAGCGTATTCCATCCAGCAGCATCCCAAGCACAAAAAGCAGCTTTTGCATTTcaaatttatgatttatggcAAACAGGCTTCATTGGACGTGACGAGGTGAGAGAGATGATATTGGCACTTCTAAGAGAATCCGATTTGATTCTTTCTGAAGACATAATTGAGGCAATAATTGATAAGGCATTTAAAGAAGCAGATTTAAAAGGAGATGGGAAGATCGATCCAGAGGAGTGGGAGGAATATGCAGCTCAAAACCCATCCTTACTGAGGAATATGACAATTCCATATTTAAAGGATCTTAATACTCAATTTCCTTGA 594 0.3872 MGCTSSKQRPRREDPAVLATQTCFNASEIEGLYELFKKLSSAVVDDGLMTKEEFQLGIFGNSKIQNLFTDRVFHLFDSKKDGVIEFGEFVRALSVFHPAASQAQKAAFAFQIYDLWQTGFIGRDEVREMILALLRESDLILSEDIIEAIIDKAFKEADLKGDGKIDPEEWEEYAAQNPSLLRNMTIPYLKDLNTQFP 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3097 197 CDD EFh 105 170 IPR002048 GO:0005509
Sto6g3097 197 SUPERFAMILY EF-hand 16 189 IPR011992 -
Sto6g3097 197 Gene3D - 14 197 - -
Sto6g3097 197 PRINTS Recoverin family signature 72 93 - -
Sto6g3097 197 PRINTS Recoverin family signature 119 137 - -
Sto6g3097 197 PRINTS Recoverin family signature 165 185 - -
Sto6g3097 197 Pfam EF hand 71 91 IPR002048 GO:0005509
Sto6g3097 197 Pfam EF hand 150 171 IPR002048 GO:0005509
Sto6g3097 197 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Sto6g3097 197 PANTHER CALCINEURIN B 1 197 IPR045198 GO:0005509|GO:0019722|GO:0019900
Sto6g3097 197 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509
Sto6g3097 197 PANTHER CALCINEURIN B-LIKE PROTEIN 5 1 197 - -
Sto6g3097 197 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Sto6g3097 197 SMART efh_1 105 133 IPR002048 GO:0005509
Sto6g3097 197 SMART efh_1 149 177 IPR002048 GO:0005509
Sto6g3097 197 SMART efh_1 68 96 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3097 Sto-Chr6 37925036 37926293 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3097 22 197 EF-hand Containing Proteins AT5G24270 60.795 2.37e-81 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3097 K06268 - zju:107429803 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3097 6 37925036 37926293 Sto6g3097 6 37925036 37926293 ECH