Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3096 ATGTGTATGATGATGTCTAGAATCCTTTATAGTGGAGATTCCTACGGTTTTGGAGTCCTTCTAGAAGTAGGATCAAGATTCCCTTTCTTGATTAAGCACGGTCACGCCTGTACGGGCGATGGCCCGTGGCTACCGGTAAGCCGAGAACACTTGGGTCAGTGCCGTCACTTAGAAAAGGTTAAACAAAATGTAAAGCATGAACAGATCATCATTCTTGCATCAGAGACATCGTTCACTGTGAATGAGGTGGAGGCTTTGTTTGACTTGTTTAAAAAACTAAGTACTGCAATTGTTGATGATGGCTTTATTCacaagGAGGAGTTCCGGCTCGCGCTTGTGGGGAGCAGCATTAAACAAAATCTATTTGCTGACAGGGTGTTTGATATGTTTGATATCAAGGGTAATGGAGTAATTGAGTTTGAAGAATTTGTTCGCTCACTAAGCATCTTTCATCCAAATGCACCTAAAGAGGAGAAAATTGCATTTGCATTTAGATTGTTTGGCCTTCGGCAGACTGGATATATCGAACGCGATGAGTTGAAGGAGATGGTCTTGGCTATTCTGACAGAATCAGATGTTACAGTTTCTGATGATGTTGTAGAATCAATGGTGAACAAGACATTAATGGACGCAGACTCAAAAGGAGATGGAAAAATTGATGAAGAAGAGTGGAAAGAATTTGTAGAAAAGTATCCCTTTCTTCTAAGGATGATGACTCTTCCATATCTAAAGGATATTACTCTGGCATTCCCCAGCTTTGTATTGCATACTCAGGTGGAAGACAACAAATGA 792 0.4053 MCMMMSRILYSGDSYGFGVLLEVGSRFPFLIKHGHACTGDGPWLPVSREHLGQCRHLEKVKQNVKHEQIIILASETSFTVNEVEALFDLFKKLSTAIVDDGFIHKEEFRLALVGSSIKQNLFADRVFDMFDIKGNGVIEFEEFVRSLSIFHPNAPKEEKIAFAFRLFGLRQTGYIERDELKEMVLAILTESDVTVSDDVVESMVNKTLMDADSKGDGKIDEEEWKEFVEKYPFLLRMMTLPYLKDITLAFPSFVLHTQVEDNK 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3096 263 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Sto6g3096 263 PANTHER CALCINEURIN B-LIKE PROTEIN 8 61 260 - -
Sto6g3096 263 Gene3D - 71 262 - -
Sto6g3096 263 ProSiteProfiles EF-hand calcium-binding domain profile. 199 234 IPR002048 GO:0005509
Sto6g3096 263 CDD EFh 159 228 IPR002048 GO:0005509
Sto6g3096 263 PRINTS Recoverin family signature 64 78 - -
Sto6g3096 263 PRINTS Recoverin family signature 126 147 - -
Sto6g3096 263 PRINTS Recoverin family signature 173 191 - -
Sto6g3096 263 PRINTS Recoverin family signature 219 239 - -
Sto6g3096 263 Pfam EF-hand domain pair 157 228 IPR002048 GO:0005509
Sto6g3096 263 ProSiteProfiles EF-hand calcium-binding domain profile. 155 190 IPR002048 GO:0005509
Sto6g3096 263 SUPERFAMILY EF-hand 73 253 IPR011992 -
Sto6g3096 263 SMART efh_1 159 187 IPR002048 GO:0005509
Sto6g3096 263 SMART efh_1 122 150 IPR002048 GO:0005509
Sto6g3096 263 SMART efh_1 203 231 IPR002048 GO:0005509
Sto6g3096 263 Pfam EF hand 124 145 IPR002048 GO:0005509
Sto6g3096 263 PANTHER CALCINEURIN B 61 260 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto6g3096 Sto-Chr6 37920769 37923886 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto6g3096 54 261 EF-hand Containing Proteins AT4G17615 55.288 1.38e-82 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3096 K06268 - qsu:111990465 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3096 6 37920769 37923886 Sto6g3096 6 37920769 37923886 ECH