Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1862 ATGAATTTGGGCGATCTGAACAAGGTCTGGGAGATCAAAGCTCTCAAGAAAGCTGATCAGGAGAAAGCGAAAATGATGTTAGAGAAAATTGCCAAACAGGTCCAACCCATTATGCGGAAACACAATTGGAGGGTCAAGGTCCTCTCTGAATTCTGCCCAAAGAATCCATCTCTTCTGGGGTTGAATGTAGGAGCTGGTATACATATAAAGTTGCGGTTGCGAAGACCAAACAGGGATTTGGACTTTTTTCCATTTCACCAAGTTCTGGATACAATGCTTCACGAGCTTTGTCACAATGCTCATGGTCCTCACAATTCAAACTTCTACAAGCTTTGGGATGAACTTAGAAAGGAATGTGAAGAGCTGATGGCTAAGGGAGTAACTGGTACGGCAGAGGGATTTGACCTTCCAGGAAGGCGTTTAGGTGGTTTATCTCGTCAACCTCCACTTTCATCTCTCCGCAAAACTACACTTGCAGCTGCAGAAAAAAGAGCACGTTTGGGGTCTCTTCTTCCATCTGGACCTAAACGTCTTGGTGGTGACAGTGCAATAATGGGTGCACTCAGTCCAGTACAAGCAGCTGCAATGGCCGCAGAAAGGAGATTACAGGATGATATATGGTGCGGTTCTCAATCTTGTGAACTTTCAGGTGATGAAGATATAGACTCCAATCCTGTTGAGGACCTTGACCATAAGGGGGGCAAAGCAGGAAACTCAAGGGAAACAGTTCATTCTACTCCACCTCCAGATCCAATATCTCGAAAAAGAAGTCGTGAATCAGATTCAAGTCTCAGCATTCCATCAGATTTTAAATATGTGGATCTAACTACAGATACAGTAGAAATTGGATCCATTAGCGAACATCAAAaaagaatatcatgttctcGGTCCAATACTGAGGCAGGATCAAGTGCTGCACATTCGTCAATCCCTTATTCCAAGCCACTACCTGTTGAAAATGGAACACTTCATTACGAGAAACCTAGCATGTGGGAGTGTCTGATGTGCACTTTGTTGAATAGACCATTAGCTCCTATATGCGAGTTGTGTGGTACACAACGGCCGAAAGATGTTGCCGCCAGGTACGACAGCTGGTCTTGTAAATTCTGTACGTTGGAAAACAGCGTGAAGTTAGATAAATGCTCTGCCTGTGATCAGTGGAGATATTCTCATGGCGCACCGGTGTCAACTCGAGCACCAAACCTTGGCACCTGA 1215 0.442 MNLGDLNKVWEIKALKKADQEKAKMMLEKIAKQVQPIMRKHNWRVKVLSEFCPKNPSLLGLNVGAGIHIKLRLRRPNRDLDFFPFHQVLDTMLHELCHNAHGPHNSNFYKLWDELRKECEELMAKGVTGTAEGFDLPGRRLGGLSRQPPLSSLRKTTLAAAEKRARLGSLLPSGPKRLGGDSAIMGALSPVQAAAMAAERRLQDDIWCGSQSCELSGDEDIDSNPVEDLDHKGGKAGNSRETVHSTPPPDPISRKRSRESDSSLSIPSDFKYVDLTTDTVEIGSISEHQKRISCSRSNTEAGSSAAHSSIPYSKPLPVENGTLHYEKPSMWECLMCTLLNRPLAPICELCGTQRPKDVAARYDSWSCKFCTLENSVKLDKCSACDQWRYSHGAPVSTRAPNLGT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1862 404 MobiDBLite consensus disorder prediction 217 265 - -
Sto5g1862 404 SMART zf_4 329 353 IPR001876 -
Sto5g1862 404 SMART zf_4 363 387 IPR001876 -
Sto5g1862 404 Pfam WLM domain 8 203 IPR013536 -
Sto5g1862 404 MobiDBLite consensus disorder prediction 293 313 - -
Sto5g1862 404 ProSitePatterns Zinc finger RanBP2-type signature. 365 384 IPR001876 -
Sto5g1862 404 ProSitePatterns Zinc finger RanBP2-type signature. 331 350 IPR001876 -
Sto5g1862 404 MobiDBLite consensus disorder prediction 293 310 - -
Sto5g1862 404 ProSiteProfiles Zinc finger RanBP2 type profile. 327 356 IPR001876 -
Sto5g1862 404 SUPERFAMILY Ran binding protein zinc finger-like 327 354 IPR036443 -
Sto5g1862 404 Gene3D - 325 364 - -
Sto5g1862 404 ProSiteProfiles WLM domain profile. 1 203 IPR013536 -
Sto5g1862 404 PANTHER ZINC ION BINDING PROTEIN 1 404 - -
Sto5g1862 404 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 1 404 - -
Sto5g1862 404 ProSiteProfiles Zinc finger RanBP2 type profile. 361 390 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1862 Sto-Chr5 13678279 13681981 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1862 K22685 - gmx:100795976 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1862 5 13678279 13681981 Sto5g1862 5 13678279 13681981 ECH