Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1830 ATGAAGACGCAGAAGCTTACGAGATGGGCACTCTCACGTGCCCTCAGCTCCGCCTCACAACCACCACCATCACTTCCGTCGGCATCAGCCTTCCCTCTCAAAACTGTAACCAAAACAAACTTCGAAGCCTCGCTCGCTCAACTTCGCCACCATGTCCGCGACTCGGACTTCGTCGCCATTGACCTCGAAATGACCGGAATCACCAGTGCCCCATGGAGGGAGTCCTTCGAGTTCGACCGCTCCGATGTTCGCTACCTCAAGGTCAAGGATTCCGCTGATAAGTTCGCCGTCGTCCAATTCGGCGTCTGCCCTTTTCGCTGGGACCCCTCTAAGCAGATCCTCATCGCTTATCCGcacaatttttatgtttttccaCGGCAGGAGCTTACTGGTTTGGGTCCTCGTTATGAGTTTCTTTGCCAGACTACTTCAATTGATTTCTTGGCTAAATACCAGTTTGATTTTAATACATGCATACATGAAGGTTTCTTACTTTCCCTTCTCTTTCCTATGaaaaaattacttGGAAAATTTGAGAAGTTGCACCCTTGGATAATGTCAGGAATATCTTATTTATCCAGAGAACAAGAAGATGCACCATTGGTCAACATGGCTGATGTTTTATTCACtgaaagaataaaaaacaaattcagTGAATGGCGTGATGGTTTATTACGGGAGCGAAATGGAGAAGACCAAATTCAAGGATTCTCCAAAGACTCAAAACAACAAATTGAAGTTATTTTCTATAAGATGAATCCAGCTCTCAGACTTCATGGATTCACATCTCATCAggttaatttgattaaattgGTCATCAGAAAGTATTTCAGAGATCTTGTTTATGTCAATGTAAACAATGCTGCTTCTGGATTGCAACAAATGGTTGTGTATACAGACTCAAAGGATGAACTGAAATTACTTCTGAAGGAGGTGAAAGATGAGCATCACAGGACAGCTGAAATGAAGATCCAAGCTGCAGTAGGATTCCGCCATGTTATTGACCTCCTTTCCTCAGAACAGAAGCTGATAGTTGGCCACAATTGTTTTCTGGATATTGCTCATGTATACAGCAAATTTATAGGTCCTCTTCCAAGGACTGCTGAAGAGTTTGTCGCCTCTGTTAACAAGTACTTTCCACGCATTGTTGATACCAAAATACTCTTGAATAGCAATAATAGTCTCCAAGAGAGGATGAGAAGGTCAGGAAAATCACTGGCCTCTCTATTTTCCTTCTTGTGTCCTCAAATTGCTGTTGGATTCAAAAGCAGCGATCTAGATTCTCTCTCTCGCATGAAAGTGGAGGTTGAAGTGAATGATTTGAGGTCATCTAGCTGGAACCCTGGAGGCAAGCATGAAGCAGGATATGATGCTTTCATGACTGGATGTGTCTTTGCCCAGTTGTGCAGTCATTTAGGAGTTGATTTTAAACTTGATGACTCTTCTCAACATTTAGCCCTCAATGAGAATATTCAGAAGTGCATCAACCTTCTCTACCTTAGTTGGATGCATGGAGACATTATTGATCTAAATACCGAGCTTCTGTTTGCTGATCAAGCAAAGGCAGTTGAAGATTTTGGTGGAGTAAACATTTATTTAATTTGGATCGTTGATCACAAAAAAAAAGCCAGAAAGATTGAAATATGCGAACTTCAAGCTATGTGTTGTTTTGAGATCAAGGAGATTTACCATATAGGGGAAGAAAACTTAATGGGTGTCAGAAAGAAACTAGAAAGGGTGATGAAACCATTATGGGTGTCAGAAAGAAACGAGAAAGttgaCAAACTTGAAAGTTGTGTGATCTTGACGTCTAAGATACCAGGGATAAGAAGAAATTGTTTTGTAGTTTTTGATGCATATGAGAAACTATACGTTTTGCATTACACACACTATCTTCACAATGTGGGAGTTCCGACAATTGCAGGAAAATCAAAGAGCGAGTCTAAAGACAAGGAGAAGAAGCATAAAAAGCATAAGGACAGGGACAAAGAGAAGGACAAGGAGCATAAGAAGCACAAGCATCGTCACAAAGACCGTAGCAAAGACAAAGACAAggataaaaagaaagataaaagtgGCCATCAAGATTCCAGCGCTGATCACGCCAAGAAACACCATGAAAAGGTTGAGGAATTTCAGTCTGCTGGTTTCAGTGTTCCGAAGTATTGA 2169 0.403 MKTQKLTRWALSRALSSASQPPPSLPSASAFPLKTVTKTNFEASLAQLRHHVRDSDFVAIDLEMTGITSAPWRESFEFDRSDVRYLKVKDSADKFAVVQFGVCPFRWDPSKQILIAYPHNFYVFPRQELTGLGPRYEFLCQTTSIDFLAKYQFDFNTCIHEGFLLSLLFPMKKLLGKFEKLHPWIMSGISYLSREQEDAPLVNMADVLFTERIKNKFSEWRDGLLRERNGEDQIQGFSKDSKQQIEVIFYKMNPALRLHGFTSHQVNLIKLVIRKYFRDLVYVNVNNAASGLQQMVVYTDSKDELKLLLKEVKDEHHRTAEMKIQAAVGFRHVIDLLSSEQKLIVGHNCFLDIAHVYSKFIGPLPRTAEEFVASVNKYFPRIVDTKILLNSNNSLQERMRRSGKSLASLFSFLCPQIAVGFKSSDLDSLSRMKVEVEVNDLRSSSWNPGGKHEAGYDAFMTGCVFAQLCSHLGVDFKLDDSSQHLALNENIQKCINLLYLSWMHGDIIDLNTELLFADQAKAVEDFGGVNIYLIWIVDHKKKARKIEICELQAMCCFEIKEIYHIGEENLMGVRKKLERVMKPLWVSERNEKVDKLESCVILTSKIPGIRRNCFVVFDAYEKLYVLHYTHYLHNVGVPTIAGKSKSESKDKEKKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKKDKSGHQDSSADHAKKHHEKVEEFQSAGFSVPKY 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1830 722 MobiDBLite consensus disorder prediction 668 682 - -
Sto5g1830 722 MobiDBLite consensus disorder prediction 641 722 - -
Sto5g1830 722 SUPERFAMILY Ribonuclease H-like 26 475 IPR012337 -
Sto5g1830 722 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 32 162 - -
Sto5g1830 722 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 182 582 - -
Sto5g1830 722 Pfam CAF1 family ribonuclease 36 162 IPR006941 -
Sto5g1830 722 Pfam CAF1 family ribonuclease 183 465 IPR006941 -
Sto5g1830 722 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 32 162 - -
Sto5g1830 722 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 182 582 - -
Sto5g1830 722 Gene3D - 35 166 IPR036397 GO:0003676
Sto5g1830 722 Gene3D - 292 513 IPR036397 GO:0003676
Sto5g1830 722 MobiDBLite consensus disorder prediction 683 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1830 Sto-Chr5 13383482 13397099 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1830 K01148 - gmx:100808217 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1830 5 13383482 13397099 Sto5g1830 5 13383482 13397099 ECH