Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1666 ATGGCGACCGAAGAGGTTAATAAACCTCCTTCCCTTCCTCCTTACCCCGAGATGATAATGAAAGCTCTCGAAGCCCTCAACGAAGAGAGTGGCTCCAACAAATCCGCCATAGCCAAGTACATAGAGTCCACCTTCGGCGAAATGCCGGCGGGCCACACCACGCTCCTCTCTCACCACCTCAACAAGATGAAGGAGAATGGAGACCTCGTCTTCATGAAGAACAACTACATGAAGCCCGACCCCAACGCTCCGCCCAAGCGCGGCCGAGGCAGGCCGCCCAAGCCCAAGGATCCCCTCGCTCCGGGCACCGTCTTGTCCCCGCCCAGGCCCAGGGGCCGCCCACCCAAGGACCCAAACGCCCCGCCTAAGCCCAAGACTACCGCCGCCAGCGGAAGGCCCAGAGGCCGGCCCAAGAAAATAGCCCGGTCCGTTCCGACGACAACGAGCATGCCAGCGGTGAATGTGACTGCGGGTAGCGGAAGGCCCAGAGGGAGGCCCCCGAAGGAGAAGCCCGCGTTTCAAGAAGTGAGCGTTGAACAATAG 543 0.6096 MATEEVNKPPSLPPYPEMIMKALEALNEESGSNKSAIAKYIESTFGEMPAGHTTLLSHHLNKMKENGDLVFMKNNYMKPDPNAPPKRGRGRPPKPKDPLAPGTVLSPPRPRGRPPKDPNAPPKPKTTAASGRPRGRPKKIARSVPTTTSMPAVNVTAGSGRPRGRPPKEKPAFQEVSVEQ 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1666 180 MobiDBLite consensus disorder prediction 71 180 - -
Sto5g1666 180 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto5g1666 180 SMART AT_hook_2 160 172 IPR017956 GO:0003677
Sto5g1666 180 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Sto5g1666 180 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Sto5g1666 180 SMART AT_hook_2 131 143 IPR017956 GO:0003677
Sto5g1666 180 Gene3D - 7 89 IPR036388 -
Sto5g1666 180 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Sto5g1666 180 PRINTS AT-hook-like domain signature 106 117 IPR017956 GO:0003677
Sto5g1666 180 PRINTS AT-hook-like domain signature 158 168 IPR017956 GO:0003677
Sto5g1666 180 SUPERFAMILY "Winged helix" DNA-binding domain 8 87 IPR036390 -
Sto5g1666 180 Pfam AT hook motif 160 171 IPR017956 GO:0003677
Sto5g1666 180 Pfam AT hook motif 131 141 IPR017956 GO:0003677
Sto5g1666 180 Pfam AT hook motif 86 94 IPR017956 GO:0003677
Sto5g1666 180 Pfam AT hook motif 108 119 IPR017956 GO:0003677
Sto5g1666 180 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Sto5g1666 180 PRINTS High mobility group protein (HMGY) signature 99 110 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Sto5g1666 180 PRINTS High mobility group protein (HMGY) signature 110 121 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Sto5g1666 180 Pfam linker histone H1 and H5 family 13 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto5g1666 180 PANTHER HISTONE H1 1 176 - -
Sto5g1666 180 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto5g1666 180 MobiDBLite consensus disorder prediction 95 122 - -
Sto5g1666 180 MobiDBLite consensus disorder prediction 163 180 - -
Sto5g1666 180 PANTHER HMG-Y-RELATED PROTEIN A 1 176 IPR031059 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1666 Sto-Chr5 11808119 11808776 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1666 - - pop:18106641 214.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1666 5 11808119 11808776 Sto5g1666 5 11808119 11808776 CCT