Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1627 ATGCCTTTCATATCGCAAATTGATCGGCAATCTGATTACAATCTAGTCAGTCCCACCACTCCGATCGTTATTGACAATGGCGCCTCGTATTTCCGCATCGGGTGGGCAGGGGAGACTGACCCCCGTGTTATTTTTCGCAACATTGTGCAAAGGCCACGCCATAAAGTTACCGGTGAAACTGTCACTATTGTCGGTGATCATAATCCAGCATTAATGAAATACTTTGACTGTACTCGCTCAGGACCACGCTCAGCATTTGATAGCAATGTTGTTTACCAGTTTGAAATAATGGAATATATTCTTGACTTTGGATTTGATCGGATGGGTGCAAATGAATCAGAGATTGATCATCCTGTCCTGATCACAGAATGTGTATGCAATCCAGTTCAGTCTCGTAGTAAAATGGCCGAACTTCTTTTTGAGACTTATGGAGTTCCATCAATAGCCTTTGGGGTTGACGCAGCtttcagttatatatataatcaacaaCATGGAGTTTGCAACAGAGATGGTCTTGCTCTGTGTCCTGGATTTACAACAACCCACGTGATTCCGTTTGTAGATGGGGAACCCATTTATAAAGGATGCTGCCGTACTAATATTGGTGGATTCCATGTGACTGATTATTTAAAGCAACTTCTTTCACTTAAATATCCTTATCATTTGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTACATTGCACAGGATTATGCTTCTGAAGCTCGGTTGTTTCAGAGAGGAGTGAAAGAAGCTGAGGAGAAAACCAGATGCTGGCAGCTCCCTTGGGTCCCTCCACCAACTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCGGCAATTAAAGAGAAACAAGGTCAAAGGCTGCGAGAAATGGCTGAAGCGAAAAGATCATCCAGAATAAATGAACTGGAAAATGAATTGCATGGTTTGGAATTTCTCTTACAGCAGCTTGAACAAGTAGAAGAGAGTGACATTCCATCTTTCCTTCGAGATACTGGCTATGTCTCTAAGCAGGAGATAGACTCTGCACGTAATAAAGTTACACAATCGTTACGGAAAGCGAAAGGTGAACCAAAGAGCGAACAAACTGAAACTGAAAAGGCTGACCCTCTTGCTAGCGAGAAGTATTCTCTCATAAACATCCCTGATGAGATGCTAACCCCAGAACAGCTCAtagaaaagaagaagcaaatgtCACTCAAATCCATGTCTGAAGGGCGACAGCGATTGAAACAGAAACGCTATGAAGAAGAAATGCAACGGGAGAGGAAACAACAGCTAGAGGAGGAGAGACGCCTAGAAAATCCAGAGCTGTACTTGGAACAATTGCATGCTAAATACAAAGACCTATCAGAGAGAGTTGACCAACGAAAGCGGCTAAAGACAAATGGAAACCATTCAAATGGAAATAATTTGTCTGGTGGTGTTGGCCGTGGTGAGAGACTGAATGCTGCTCAAAGGGAAAGAATGCGCCTCTTGACAACTGCAGCCTTTGATCGTGGTAAAGGTGAGGATACATTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTGATGAGTAAAGAtaatgatgacgatgatgagGGACCAGATGAGGATGAGGCAGAATTGGCTCGCATCTCTTCTAGGCTCCGGGACTTGGATCCAACATTTGTACCAAGGTTGGAAACAGGTAGCTCTCAACCAGCTGAGGCACCACGAATTCGTCCTCTGACCAAGGAAGATTTTCAGATTGTTTTTGGGGTGGAAAGGTTCAGATGCCCTGAAATTTTGTTCAATCCAAACTGGATTGGGGTTGATCAGGTAGGATTAGATGAGATGACTGGGGTTTCCATAAGGAGGTTACCATATAAGGATGAAAGTTTGGAAGAGAGACTAACTAAGTCAATACTTGTCACCGGCGGAAGCTCTCTCTTCCCCGGTATGATTGAACGCCTGGAATCTGGGATTCGGATGATTAGACCCTGCGGAACACCTATAAAAATAGTTAGAGCATTGGATCCGGTTATGGATGCATGGAGGGGGGCTTCTGCTTATGCCTCAGCCTCTCTGTTTCATACCCAAACTTTCAGTAGGATGGATTATTATGAAAAGGGTGAAGATTGGCTTCGCAGTTATCAGCTGCAATATACATTATAG 2169 0.4265 MPFISQIDRQSDYNLVSPTTPIVIDNGASYFRIGWAGETDPRVIFRNIVQRPRHKVTGETVTIVGDHNPALMKYFDCTRSGPRSAFDSNVVYQFEIMEYILDFGFDRMGANESEIDHPVLITECVCNPVQSRSKMAELLFETYGVPSIAFGVDAAFSYIYNQQHGVCNRDGLALCPGFTTTHVIPFVDGEPIYKGCCRTNIGGFHVTDYLKQLLSLKYPYHLARFTWEKVEDLKMEHCYIAQDYASEARLFQRGVKEAEEKTRCWQLPWVPPPTEEPPSEEEIARKAAIKEKQGQRLREMAEAKRSSRINELENELHGLEFLLQQLEQVEESDIPSFLRDTGYVSKQEIDSARNKVTQSLRKAKGEPKSEQTETEKADPLASEKYSLINIPDEMLTPEQLIEKKKQMSLKSMSEGRQRLKQKRYEEEMQRERKQQLEEERRLENPELYLEQLHAKYKDLSERVDQRKRLKTNGNHSNGNNLSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDDEGPDEDEAELARISSRLRDLDPTFVPRLETGSSQPAEAPRIRPLTKEDFQIVFGVERFRCPEILFNPNWIGVDQVGLDEMTGVSIRRLPYKDESLEERLTKSILVTGGSSLFPGMIERLESGIRMIRPCGTPIKIVRALDPVMDAWRGASAYASASLFHTQTFSRMDYYEKGEDWLRSYQLQYTL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1627 722 SMART actin_3 19 718 IPR004000 -
Sto5g1627 722 Pfam Actin 18 268 IPR004000 -
Sto5g1627 722 Pfam Actin 587 714 IPR004000 -
Sto5g1627 722 MobiDBLite consensus disorder prediction 406 439 - -
Sto5g1627 722 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Sto5g1627 722 PANTHER ACTIN 14 714 IPR004000 -
Sto5g1627 722 MobiDBLite consensus disorder prediction 349 379 - -
Sto5g1627 722 Gene3D Actin; Chain A, domain 4 203 253 - -
Sto5g1627 722 MobiDBLite consensus disorder prediction 355 379 - -
Sto5g1627 722 Coils Coil 449 469 - -
Sto5g1627 722 Gene3D - 612 681 - -
Sto5g1627 722 PANTHER ACTIN-RELATED PROTEIN 5 14 714 IPR027664 -
Sto5g1627 722 Gene3D - 18 169 - -
Sto5g1627 722 Gene3D - 174 202 - -
Sto5g1627 722 Gene3D - 682 710 - -
Sto5g1627 722 Gene3D Actin; Chain A, domain 4 522 611 - -
Sto5g1627 722 Coils Coil 419 441 - -
Sto5g1627 722 SUPERFAMILY Actin-like ATPase domain 19 161 IPR043129 -
Sto5g1627 722 SUPERFAMILY Actin-like ATPase domain 170 715 IPR043129 -
Sto5g1627 722 Coils Coil 309 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1627 Sto-Chr5 11446429 11452466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1627 588 709 Miscellaneous Gene Families AT2G42100 34.426 4.31e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1627 K11672 - gmx:100808396 1200.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1627 5 11446429 11452466 Sto5g1627 5 11446429 11452466 CCT
Sto5g1627 5 11446429 11452466 Sto5g1627 5 11446429 11452466 ECH