Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1573 atGGCGTACAAAGTGGACCATGAATACGACTATCTTTTTAAGATCGTATTGATTGGGGATTCAGGTGTTGGAAAATCCAATATCCTTTCTAGGTTTACCCGAAATGAGTTCTGTTTGGAATCCAAGTCTACCATTGGAGTGGAATTCGCAACGAGAACGTTACAGGTGGAGGGAAAGACTGTGAAGGCACAAATATGGGACACTGCTGGTCAAGAGAGGTACCGAGCAATCACAAGTGCCTACTATAGAGGAGCTGTTGGAGCCTTGTTGGTCTATGACATTACAAAAAGGCAAACATTTGAAAATGTGCAGAGGTGGCTTCGTGAACTAAGGGATCACGCAGATTCTAACATTGTTATTATGATGGCTGGGAATAAATCTGATCTGAATCATTTGAGAGCGGTCGCTTCGGACGATGCTCAAAGTTTGGCTGAGAAGGAAAATCTGTCATTTCTAGAAACTTCAGCATTAGAGGCTTATAATGTTGAGAAGGCATTCCAAACCATATTGTtggatatatatcaaattatgagTAAAAAGGCACTGGCAGCACAGGAGGCAGCTTCCTCTACTGGCCTTCCTCAAGGGACAACCATAAATGTCTCAAATTTGACAGGTAATAATAATGTGGAAAAGAAAACAACTTGCTGCTCAAATTAA 660 0.4045 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVASDDAQSLAEKENLSFLETSALEAYNVEKAFQTILLDIYQIMSKKALAAQEAASSTGLPQGTTINVSNLTGNNNVEKKTTCCSN 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1573 219 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Sto5g1573 219 SMART ran_sub_2 18 216 - -
Sto5g1573 219 ProSiteProfiles small GTPase Rab1 family profile. 8 217 - -
Sto5g1573 219 PRINTS Transforming protein P21 ras signature 13 34 - -
Sto5g1573 219 PRINTS Transforming protein P21 ras signature 36 52 - -
Sto5g1573 219 PRINTS Transforming protein P21 ras signature 54 76 - -
Sto5g1573 219 PRINTS Transforming protein P21 ras signature 116 129 - -
Sto5g1573 219 PRINTS Transforming protein P21 ras signature 151 173 - -
Sto5g1573 219 ProSiteProfiles small GTPase Ras family profile. 1 219 IPR001806 GO:0003924|GO:0005525
Sto5g1573 219 PANTHER - 1 218 - -
Sto5g1573 219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Sto5g1573 219 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 1 218 - -
Sto5g1573 219 SMART rab_sub_5 13 176 - -
Sto5g1573 219 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Sto5g1573 219 CDD Rab11_like 10 174 - -
Sto5g1573 219 Gene3D - 5 217 IPR027417 -
Sto5g1573 219 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Sto5g1573 219 SMART rho_sub_3 15 175 IPR001806 GO:0003924|GO:0005525
Sto5g1573 219 SMART ras_sub_4 10 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1573 Sto-Chr5 11010403 11012049 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1573 K07904 - tcc:18585999 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1573 5 11010403 11012049 Sto5g1573 5 11010403 11012049 CCT
Sto5g1573 5 11010403 11012049 Sto5g1573 5 11010403 11012049 ECH