Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1549 ATGTCTTCATTTCACGCAGTAACTCCCTGCTCCCTTCTTTCCCGATTGGTCAGGTCGGCGATTCCTTCCCGATCCTATTGGCTCCTGCTTCTCCCAGTAAAATCGTTTCGGCTGTTCCACGTGCTACGTCATCGCTTTGGCGGCGCAACGGATGATGTGTgTTTTGAGCCGATCTGCATCGAGGGATTGAGACAGTCGAGTTTGGGTTTGGAATTCCCTTTGTTGAGCTCTGAAGTGGAAGTAGTTGGCGTTTGGAGAATGAGCACTCGCTTGACCGATGTGGTTCTTGACTGTGTTATGCCTTATATTCACGACCCCAAAGATAGGGATGCGATTTCTCAAGTTTGCCGGCGGTGGTACGAGCTTGACTCCTTGACTCGGAAGCATGTGACGATTGCTCTGTGTTACACGACCACACCAGACCGTCTCCGGCGAAGATTTCCCCACCTGGAGTCGCTCAAGCTGAAAGGAAAGCCGAGGGCGGCTATGTTCAATTTGATTCCGGAGGACTGGGGAGGATATGTGGCGCCCTGGGTCAAAGAGATTGCAActtattttgattgcttgaaGTCTCTTCACTTTCGGCGTATGATTGTGAGAGATTCCGATCTTGAGCTTCTTGCGCGGTCCAGGGGACATGTGCTTCAAGCTCTTAAACTCGACAAGTGTTCTGGTTTTTCCACGGATGGCCTTCTCCATATTGGTCGGTCTTgcaggaACTTAAGAGTGTTGTTTTTGGAGGAAAACCAAATTACTGAGAATGATAGCAATTGGCTGCATGAGCTTGCAGTGAATAATACAGTTCTCGAGGCTCTTAATTTTTACACAACAGATCTTGCCACTATCAAGATTGAGGACCTTGAACTTATAGCAAAAAACTGTCGCAACTTAGTTTCTGTGAAAATCACTGATATCGAAATCTTGGATCTTGTGAACTTCTTTCGTTCTGCAACTTCATTAGAAGAATTTTGTGGGGGTTCTTACAACAAGCCGCCGGAAAAGTATGCTGCCGTATCATTTCCCGCAAAGTTATGTCGATTGGGTTTGacatatattggaaagaatgAACTGCCAATAGTGTTCCCTTTCGCAGCCCTCCTGAAAAAATTGGATCTCTTGTATTCCATGTTGGATACAGAGGATCATTGTACATTAATTCAAAAGTGCACCAACTTGGAAGTCCTTGAGTCAAGAAATGTAATTGGAGATAGAGGACTAGAAGTTCTGGCTCAAAGCTGCAAGAGGCTTAAGAGGCTTAGGATTGAGCGAGGTGACGATGAGCAAGGAATGGAGGATGAAGAAGGTGTTGTTTCTCAGAGAGGATTAATTGCTCTGTCACAGGGGTGTCCTGAACTTGAATACTTGGCTGTATATGTATCCGACATTACAAATGCATCCCTGGAATGTATTGGCACTCACTTGAAAAACCTCACCGATTTTCGCCTTGTCTTGTTGGACCGTGAGGCTACCATAACTGATTTACCACTTGACAATGGGGTGAGGGCTTTATTAAGGGGTTGCAACAAGCTAAGAAGATTTGCTCTGTATCTTCGTTCTGGAGGTTTGACTGATGTTGGTCTTGCATACATTGGGCAATACAGCCAAAATGTGAGATGGATGCTTCTGGGTTATGTAGGGGAATCTGATGCAGGGCTTTTGGAGTTTGCTAAGGGCTGCCCAAGCCTTCAGAAACTTGAAATGAGAGGGTGTACCTTCAGTGAGTATGCACTAGCTGTTGCTGCCACACAACTGACTTCACTGAGGTATCTATGGGTGCAAGGGTATAGAGCAACTACATTTGGGCATGATCTTTTGGTAATGGCTAGACCCTTCTGGAATATTGAGTTGATCCCTTCTAGACGGGTTCGTCTTACTTCTCCACATGAAGAGTTTGGAATGATTGAACATCCAGCACATATTCTTGCATATTACTCACTTGCAGGACAAAGAACAGATTATCCGAATACTGTGATTCCTTTGGATTCAACAGCATATATTGGAGCTTAG 2007 0.4444 MSSFHAVTPCSLLSRLVRSAIPSRSYWLLLLPVKSFRLFHVLRHRFGGATDDVCFEPICIEGLRQSSLGLEFPLLSSEVEVVGVWRMSTRLTDVVLDCVMPYIHDPKDRDAISQVCRRWYELDSLTRKHVTIALCYTTTPDRLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGYVAPWVKEIATYFDCLKSLHFRRMIVRDSDLELLARSRGHVLQALKLDKCSGFSTDGLLHIGRSCRNLRVLFLEENQITENDSNWLHELAVNNTVLEALNFYTTDLATIKIEDLELIAKNCRNLVSVKITDIEILDLVNFFRSATSLEEFCGGSYNKPPEKYAAVSFPAKLCRLGLTYIGKNELPIVFPFAALLKKLDLLYSMLDTEDHCTLIQKCTNLEVLESRNVIGDRGLEVLAQSCKRLKRLRIERGDDEQGMEDEEGVVSQRGLIALSQGCPELEYLAVYVSDITNASLECIGTHLKNLTDFRLVLLDREATITDLPLDNGVRALLRGCNKLRRFALYLRSGGLTDVGLAYIGQYSQNVRWMLLGYVGESDAGLLEFAKGCPSLQKLEMRGCTFSEYALAVAATQLTSLRYLWVQGYRATTFGHDLLVMARPFWNIELIPSRRVRLTSPHEEFGMIEHPAHILAYYSLAGQRTDYPNTVIPLDSTAYIGA 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1549 668 SUPERFAMILY RNI-like 188 602 - -
Sto5g1549 668 Pfam Transport inhibitor response 1 protein domain 148 194 IPR041101 -
Sto5g1549 668 Gene3D - 85 127 - -
Sto5g1549 668 Gene3D Ribonuclease Inhibitor 128 664 IPR032675 -
Sto5g1549 668 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 87 663 - -
Sto5g1549 668 SMART LRR_CC_2 389 412 IPR006553 -
Sto5g1549 668 SMART LRR_CC_2 559 582 IPR006553 -
Sto5g1549 668 SMART LRR_CC_2 507 533 IPR006553 -
Sto5g1549 668 SMART LRR_CC_2 212 237 IPR006553 -
Sto5g1549 668 SMART LRR_CC_2 449 473 IPR006553 -
Sto5g1549 668 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 87 663 - -
Sto5g1549 668 Pfam F-box 89 129 IPR041567 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1549 Sto-Chr5 10768094 10772737 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1549 K13463 - gmx:100793081 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1549 5 10768094 10772737 Sto5g1549 5 10768094 10772737 CCT
Sto5g1549 5 10768094 10772737 Sto5g1549 5 10768094 10772737 ECH