Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1517 ATGAGAATCTCATTAGACTCGCACGAGACGAACTCGGACCAAAGGCGTTCCTCGACGCCCAAAGAAGAAGTCGAATGGGTCCCACTTCAGAAGCACCCAGTCTTCGCCGCCTCCAATGCCTCCATAGACGCCGATTCCGCCTCTGCGGTTTCCCGAAACCTGGTGGCCTGGGATGGAGCCTCTCGCCTCTACTTCTGGGACACCAACTCCAACTGCCTCCATCGAATGTCGCTTCGCCTCGGCGAGCCTGATCCTACTTCTGTACTCGCTGCTTCCCCTTCTAAGGTATTGCAAGCAGATGTAGAGCTCAACTTTGCTATCCACAAAATCTCTATCAACAGGAATAGATCAGCATTACTCCTTTTTGGTTCTGAAAATCTATGTGTTATGTATCTGTATGGACGTACATCTAAAAAGGATGTAAATTTAATTTGCAGGACTATTACAATTGGTCCGCAAACATATTCCAAGGGTAGCAATGATATACGTGTACTGAAAGCTTTATGGCATCCTTACAGCGATAGTCATTTGGGAATCCTTTCCTCTGACTCAGTTTTCCGGCTTTTTAATTTGGCTTCGGATCCTTTGCAACCAGAGCAAGAATATTATTTACAGCCTCTGGATCCAGGCAGATCCAGAAATGCCTCATCAATGTGCCCAgttgatttttcttttggggGTGACCACTTGTGGGACAGATTCAGTGTTTTTATTTTGTATAGTGATGGAGCTATTTACATCCTTTGCCCAGTTGTTCCATTTGGAAGTCTCTTCAAATCAGAATCTGTATTAGAAATATACAGTGATGCTCATACATTTGGGCTCAAATCAGCAAACTCTAAAGTTGCTAATAATGCAAGATTGGCAATATCATGGTTGGAAGAAACATTCCCTGAGTTACAAAATGAAGAAATGGAAGGAGAGAACCTGTCTGTACTAAGAGCTCATGCTTATGCCCAATTTGATGCGTCTCTTGTCTTGCagGGACCTCTCCGAAGAGTAGGTCAGGGTGGGAATGAAGATTCAATTGGTCGTAGTGCAGAATGTGAAGGTCGTGCAGTTAGTTTTCTTTATGATTTAGTCAGCAAAGACACAGTACTGGTAACTGCTTGGAATGGTGGGCAATTACAGGTAGATGCTCTGGCTGATGAAATCCAACCTGTCTGGAGTGTTGGTAGTCCTCCTCGCCTTCGAGTTGATTCCCATGACCATATTCTTGGCCTTGCTATGATTTGTGAGTCAATTTCCATTGTCCTTCCTGAGAAGGTTGATGATACTCTCTGGTTGGGCAATCCACCACCTCTTTTGAGACTGGCTATTGTCGATTTGGCTCTGCCACGAAGGGTGGAAAGTGGTTATAATATTTCACTGTTCATTGATCCTCTTATGCCGGAGAGAATATATTCCCTTCATGATGGAGGGATTGATTCAATAGTGTTGCATTTTCTTCCATTCACAAGTCAGGCAAATGGCAAGGATGATACAATGAGAACTCCTTCTGTGCATCCTGTTCTAAATACATGCCAGAGTGAGAGCACCTCAGCATCCCCACTTTGTGGTTTTGTGTCATTGTCAGATTCCTTTGGGTATTCCTGGATTGTGGCTGTCACTCTTTCTCAGGAGTGCATTGTGCTAGAGACAAAAACGTGGAACCTCTTGCTGCCTCCGAGTCTTGATATGGAGAAAAAATCCATTCAATCAGAGGAAGAATCAAAAGAGAGAGATGTACCAACTATCATTAGcaaagaattacttagtgggcCAAAGGTGGTACTTGTTCCTCAGGCTTCTCCAAGTTTACGTGCTGTTTCACCTGATTCAATTGAAGGGCGATCAACATTGCATCAGTATTTCAAGCTTTTTCATGAAACTTATGTGGAGTATGCACATAAGGTGTACTTGGAGCTCAAGCATCATGCACCTCAATTGAAGAAAATCATTGATGACCAACATGCTCGTTTTGGTGAAGCACAGCAGAAGCTTTTAAAAGTTGAGGAGAAACATCCATTATTAGAGAAGAGGATAGATCGTGCAGTTCAAATGCATAGGTCTTTGGAAGAGCGCTTGCAACGATTAAGGAACTTACCTGTTGCTCACAAAAAACCATTATCTAGAGCTGAGAGACAGTTCAAGTCTGAGCTTGACCACTTCAGGGAAGTTGAGTTAGATGCTTTGCATTCTTCTGTTGATGCTTTAAGTGCAAGGATGAGAAGGCACACCCAAGCATCCAAAGCCGATAGCCACCAAAAGCAAATACAAGGGAAGAAGAATTATGTTGACAATGGCCAGATATCCATGCTCCAATCTTCGCTTGAAAAACTCTCACTTTTAAATAGTGAGAACTCAAAAAAAGTTAAGCTTGTTGAGTCTGCATTGAGAAAACAGGAAAGGAGCAGCAGGGAATCAAGCCTACCTAAGCTTTGA 2424 0.4257 MRISLDSHETNSDQRRSSTPKEEVEWVPLQKHPVFAASNASIDADSASAVSRNLVAWDGASRLYFWDTNSNCLHRMSLRLGEPDPTSVLAASPSKVLQADVELNFAIHKISINRNRSALLLFGSENLCVMYLYGRTSKKDVNLICRTITIGPQTYSKGSNDIRVLKALWHPYSDSHLGILSSDSVFRLFNLASDPLQPEQEYYLQPLDPGRSRNASSMCPVDFSFGGDHLWDRFSVFILYSDGAIYILCPVVPFGSLFKSESVLEIYSDAHTFGLKSANSKVANNARLAISWLEETFPELQNEEMEGENLSVLRAHAYAQFDASLVLQGPLRRVGQGGNEDSIGRSAECEGRAVSFLYDLVSKDTVLVTAWNGGQLQVDALADEIQPVWSVGSPPRLRVDSHDHILGLAMICESISIVLPEKVDDTLWLGNPPPLLRLAIVDLALPRRVESGYNISLFIDPLMPERIYSLHDGGIDSIVLHFLPFTSQANGKDDTMRTPSVHPVLNTCQSESTSASPLCGFVSLSDSFGYSWIVAVTLSQECIVLETKTWNLLLPPSLDMEKKSIQSEEESKERDVPTIISKELLSGPKVVLVPQASPSLRAVSPDSIEGRSTLHQYFKLFHETYVEYAHKVYLELKHHAPQLKKIIDDQHARFGEAQQKLLKVEEKHPLLEKRIDRAVQMHRSLEERLQRLRNLPVAHKKPLSRAERQFKSELDHFREVELDALHSSVDALSARMRRHTQASKADSHQKQIQGKKNYVDNGQISMLQSSLEKLSLLNSENSKKVKLVESALRKQERSSRESSLPKL 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1517 807 Pfam Nuclear pore component 29 226 IPR019321 -
Sto5g1517 807 Pfam Nuclear pore component 454 787 IPR019321 -
Sto5g1517 807 PANTHER NUCLEOPORIN NUP84-RELATED 16 797 IPR037700 GO:0000055|GO:0000056|GO:0006913|GO:0017056
Sto5g1517 807 MobiDBLite consensus disorder prediction 1 23 - -
Sto5g1517 807 SUPERFAMILY WD40 repeat-like 53 247 IPR036322 GO:0005515
Sto5g1517 807 Coils Coil 675 695 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1517 K14318 - gmx:100801853 1253.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1517 5 10523578 10530036 Sto5g1517 5 10523578 10530036 ECH