Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1297 ATGGAGAGGTCTAGATCTAAAAGGAACTACTACTATGACCAGGACTATGATTCAGAGACCTTGGCTAGGACGAGGCCTCGGTATAATCACAATTACAACAGTACCGGCCACCGTAAACGTGGCGGCGGTGGAgccagtggtggtggtggtcggCCTTCAAAGGCCCAAGACTCATCTCTAACGGGTATCACAAGTTACCGCATTTTGTGCCACGATATGAAGGCCGGTGGTGTGATTGGGAAGTCGGGGCGCATTATGAAGTCTATTAGGCAGCACACCGGCGCGTGGATCAACGTGCACGGGCTGATCCCCGGTGATGAGGAGCGAATCATTGAGATATCTGACATGCGCCGGCGGGACCCGGAGGGTCGAATGCCGTCATTATCACCGGCGCAGGAGGCTTTGTTGTTGATTCATGAGAGGATTCTTGAGAGCGAAGCACCGTTTGGGATTGGAGAAGGTGAAGAGGAGTATAGAGGCAGAGGAGGTGGGAGCAACCGTGTGACCACTAGATTGGTAGTGTCCGAAACGCATGTAGGGTGCTTGCTGGGAAAAGGAGGGAAGATTATTGAACAAATGAGGAATGAGACCAGGACCCAAATTAGGATACTTCCTAGAGATCACAATCTACCTCGTTGTGTTTCCAAATCGGAAGAAATTGTTCAGGTTGTAGGTGATGTAAATTGTGTAAAAAATGCATTAGTAATTATAGCAGCACGTTTGAGGGAGAGCCAGCATCGTGACCGTAGTCATTTTCATGGACGAGCACATTCACCAGAGCATTTTTTCCCTCCTGACGATGATTGTATTCCTCACATGACTGGTGCAGGTCGTAGACCATCCGACAATGGGCAAGCTTTTGGATCACGAATATCTGCCACCAATATCAGAAACAATAACTACTCCTTGTTAGGTAATGCAACAGAACCAGAGGCTTCTACTGGGACTGTTGATGCACCTCCCTTTTATGTTGAGGACCTTGTTTTTCGAGTGCTTTGTCCAATTGACAAAGTTGATCGTATCATTGGGGAAGCGAATGGAATTGTGGAGTTCCTTCAAAATGAAGTTGGTGTTGATGTTAAGGTCGCCAACCCTGTAATTGGTGCAGATGAACAAATAGTTATAATTTCTTCAGAGGAGGGTTCCGATGATGAGCTGTTCCCAGCCCAGGAAGCTTTATTGCATGTTCAAACTCGCATTGTTGATCTTGCTCCAGATAAGGAAAACATTATAACCACCAGGCTGCTTGTCCCATCCAGTGATATCGAATTTTTAGATGGGAAAGATGCATCTCTATCAGAAATATGGAGACGAAGTGGTGCAAATATACATATTCTTCCTAGAGAAGAGCTACCTCCTTGTGTTGCAGAAACTGATGAAGTTATACAGATTGTAGGTGAGATAAAAGCAGCCAGAGATGCTGTTGTTGAGGTGACATCAAGActaagaagttatttttttagtgattTCTTTCAAAGGGACTTAAACACAATTCTACCAACTACCCTTCTTCCTGGTGTGGAGGCATCTTCATCCAATAGTATAGCTACAGTTCACGAGGTTTATTCTGGCAATGAAACTTCCTCAACCTATCAGAATTTGCAAACTGTGCCAGCAGCAACACTTCCATCAAAGGAATCTGGAGGATCTAGCAGTGAGACAGGAAAACAGAAAGAAATTGACCATCACGGTGATGTATTGAGTAATATAAACAGGATTTCTGTACCACTTGTCACTAGGAGTACACTTGAAGTTGTATTACCAGAGCAGGCAGTTCCAAAACTTGTAGTCAAATCCAAAAACATGCTTGCACAGATAAGTGAGTTGTCAGGAGCCAATGTAACCTTTGTAGAAGACAGACCACAACTGACAGAGAAAATTGTACGGATATCTGGTACTCCAGAGCAGGCTGAGAGAGCCCAGAGCTTGCTTCAGGGATTTATTTTGAGCACTCAAGAAGATGGTCCTTAA 1971 0.4394 MERSRSKRNYYYDQDYDSETLARTRPRYNHNYNSTGHRKRGGGGASGGGGRPSKAQDSSLTGITSYRILCHDMKAGGVIGKSGRIMKSIRQHTGAWINVHGLIPGDEERIIEISDMRRRDPEGRMPSLSPAQEALLLIHERILESEAPFGIGEGEEEYRGRGGGSNRVTTRLVVSETHVGCLLGKGGKIIEQMRNETRTQIRILPRDHNLPRCVSKSEEIVQVVGDVNCVKNALVIIAARLRESQHRDRSHFHGRAHSPEHFFPPDDDCIPHMTGAGRRPSDNGQAFGSRISATNIRNNNYSLLGNATEPEASTGTVDAPPFYVEDLVFRVLCPIDKVDRIIGEANGIVEFLQNEVGVDVKVANPVIGADEQIVIISSEEGSDDELFPAQEALLHVQTRIVDLAPDKENIITTRLLVPSSDIEFLDGKDASLSEIWRRSGANIHILPREELPPCVAETDEVIQIVGEIKAARDAVVEVTSRLRSYFFSDFFQRDLNTILPTTLLPGVEASSSNSIATVHEVYSGNETSSTYQNLQTVPAATLPSKESGGSSSETGKQKEIDHHGDVLSNINRISVPLVTRSTLEVVLPEQAVPKLVVKSKNMLAQISELSGANVTFVEDRPQLTEKIVRISGTPEQAERAQSLLQGFILSTQEDGP 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1297 656 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 3 558 - -
Sto5g1297 656 Pfam KH domain 582 645 IPR004088 GO:0003723
Sto5g1297 656 Pfam KH domain 66 114 IPR004088 GO:0003723
Sto5g1297 656 Pfam KH domain 169 238 IPR004088 GO:0003723
Sto5g1297 656 ProSiteProfiles Type-1 KH domain profile. 167 237 - -
Sto5g1297 656 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 157 248 IPR036612 GO:0003723
Sto5g1297 656 MobiDBLite consensus disorder prediction 539 561 - -
Sto5g1297 656 CDD KH-I 582 645 - -
Sto5g1297 656 MobiDBLite consensus disorder prediction 539 554 - -
Sto5g1297 656 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 404 489 IPR036612 GO:0003723
Sto5g1297 656 MobiDBLite consensus disorder prediction 1 24 - -
Sto5g1297 656 CDD PCBP_like_KH 65 139 - -
Sto5g1297 656 Gene3D K Homology domain, type 1 164 246 IPR036612 GO:0003723
Sto5g1297 656 SMART kh_6 409 483 IPR004087 GO:0003676
Sto5g1297 656 SMART kh_6 325 398 IPR004087 GO:0003676
Sto5g1297 656 SMART kh_6 579 649 IPR004087 GO:0003676
Sto5g1297 656 SMART kh_6 62 143 IPR004087 GO:0003676
Sto5g1297 656 SMART kh_6 166 242 IPR004087 GO:0003676
Sto5g1297 656 CDD PCBP_like_KH 169 238 - -
Sto5g1297 656 Gene3D K Homology domain, type 1 579 651 IPR036612 GO:0003723
Sto5g1297 656 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 327 428 IPR036612 GO:0003723
Sto5g1297 656 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 59 114 IPR036612 GO:0003723
Sto5g1297 656 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 573 650 IPR036612 GO:0003723
Sto5g1297 656 Gene3D - 325 485 - -
Sto5g1297 656 MobiDBLite consensus disorder prediction 1 59 - -
Sto5g1297 656 ProSiteProfiles Type-1 KH domain profile. 326 393 - -
Sto5g1297 656 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 558 - -
Sto5g1297 656 ProSiteProfiles Type-1 KH domain profile. 63 135 - -
Sto5g1297 656 ProSiteProfiles Type-1 KH domain profile. 580 644 - -
Sto5g1297 656 Gene3D K Homology domain, type 1 63 145 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1297 Sto-Chr5 8842982 8847730 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1297 K21444 - gmx:100804167 938.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1297 5 8842982 8847730 Sto5g1297 5 8842982 8847730 ECH