Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1296 ATGGAAGCTTCATTTCTTCTTCCCTCTCCTACTTTCAGTGGATGCAgGACAAGCAAAGAGGCTCACACGTCATCAGTGTGTGAACAGAAATTCATAACTTGTTTCCCAGTTTGtaagcaaaaacaaaaatacaatcTGAAGCTTTACATTATACCCATTAGGATTGTTGCTCGGTTTTGTGTCTCAAGATCTCCAGTTGGGTCATTGGAAGCTGGTGAGAAAGGCCCAGAAAATGATGTTTATTCTAGTTTTTCATCTCCAATGAACTATCAGAGATGTCTGTCATACTACTTGACTCTGCAAAGTGATCCCTTTTACAGCATGAACGATTTTGAGAGACAGTTGCAAGAATTATTTGATGATATCAAAAGAATGATTCAGATGGGAAACAAAAATGATGCTATAGATTTGCTTAATGCAAATTATGAAATGGTGAAAGAGCAGCTGCGTGCAGGCAGTAAAGGCATAGAAGAAGCTGCAACCCTGGACATCATAGCACTGGGTTTCATGGCTGTTGGAGACCTAAAATTTGTTGGTTCCCTATTGAATGTGATGAAGGAACTTGTTGACACTTTGAAGGATGATGCACCACGTCTGGATTCAATACTCATGCATATGGGAAGTATGTATTCAACTTTAGGaaactttaaaaattcaatGGACACATATCAAAGGGCTATCTACATCATGGAAAGGACCTACGgtatggattgtaCTTTTCTTGTCACACCCTATTTGGGTATGGCAAAAGTTCTTGGTTCAACTGGAAAAGCAACAAAGGCAATGGAAATGTACCAGAAGGCAATTACTCTCCTGGAGTCAAGTAGAGGTGCTGAAAGCGAGGATTTGGTTGTACCTTTACTTGGTCTTGGCAATCTTTTACTTAAAGAAGGAAAAGCCATTGATGCAGAAACTCATTTTACTAGagttCTAAGCATATACGCAAAGTCGTATGGACAAAACGATGGTAGAAGTGGAATGGCTATGAGTTCTTTGGCCCAAGTGAAGTGTGCTCAAGGGAATGCAGATGAAGCAATCCATTTGTATAAAAGCGCTCTTCAGATCATTGAGGAATCAAACTACTTGTCACCAGATGACAGCATCATGGAGAAGATGAGGGTGGATCTAGCTGAATTGCTTCATGCTGTTGGGAGAGGACAAGAAGGCAGAGAATTATTGGAGGAATGTTTATTAATCAGTGAGAGGCATAAAGGAAAGGAGCATCCCAACTTAGTGACGCACATGATGAATCTTGCAACTTCATATTCACGCTCAAAGAATTATGTGGAGGCCGAGCGTTTGCTCAGAAGAAGTTTGAAAATCATGATAAAGAATATGGGAGCTGATGATCAGTCCATCACTTTCCCTATGTTGCACCTCGCAGTTATTCTCTACCATTTGAAACAGGATGAAGAAGCAGAGCAATTGGCCCTAGAGGTATTGCGCATACGTGAGAAGGCATTTGGAGAAGACTCTCTTCCTGTTGGAGAGGCTTTGGATTGTTTGGTGTGTATTCAAACCAGACAAGGTAAGGACGATAATGAATTACTCAAGCTGCTTAAAAGAATCCTTAACATCCAAGAGAAAGAATTTGGGCACGAGAGTGAGGATGTTATGGTTACCctgaaaaaaattgtattttacctTGACAAACTGGGGAGAAGAGATGAAAAGCTTCCCCTGCAGAGAAGGTTGTCTGTGCTGAGAAGGAAGTACAAGCAAATTCATCACTAA 1734 0.3945 MEASFLLPSPTFSGCRTSKEAHTSSVCEQKFITCFPVCKQKQKYNLKLYIIPIRIVARFCVSRSPVGSLEAGEKGPENDVYSSFSSPMNYQRCLSYYLTLQSDPFYSMNDFERQLQELFDDIKRMIQMGNKNDAIDLLNANYEMVKEQLRAGSKGIEEAATLDIIALGFMAVGDLKFVGSLLNVMKELVDTLKDDAPRLDSILMHMGSMYSTLGNFKNSMDTYQRAIYIMERTYGMDCTFLVTPYLGMAKVLGSTGKATKAMEMYQKAITLLESSRGAESEDLVVPLLGLGNLLLKEGKAIDAETHFTRVLSIYAKSYGQNDGRSGMAMSSLAQVKCAQGNADEAIHLYKSALQIIEESNYLSPDDSIMEKMRVDLAELLHAVGRGQEGRELLEECLLISERHKGKEHPNLVTHMMNLATSYSRSKNYVEAERLLRRSLKIMIKNMGADDQSITFPMLHLAVILYHLKQDEEAEQLALEVLRIREKAFGEDSLPVGEALDCLVCIQTRQGKDDNELLKLLKRILNIQEKEFGHESEDVMVTLKKIVFYLDKLGRRDEKLPLQRRLSVLRRKYKQIHH 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1296 577 Coils Coil 108 128 - -
Sto5g1296 577 Gene3D Tetratricopeptide repeat domain 176 365 IPR011990 GO:0005515
Sto5g1296 577 Pfam MalT-like TPR region 201 376 IPR041617 -
Sto5g1296 577 SMART tpr_5 326 359 IPR019734 GO:0005515
Sto5g1296 577 SMART tpr_5 412 445 IPR019734 GO:0005515
Sto5g1296 577 SMART tpr_5 200 233 IPR019734 GO:0005515
Sto5g1296 577 SMART tpr_5 454 487 IPR019734 GO:0005515
Sto5g1296 577 SMART tpr_5 284 317 IPR019734 GO:0005515
Sto5g1296 577 SMART tpr_5 242 275 IPR019734 GO:0005515
Sto5g1296 577 Gene3D Tetratricopeptide repeat domain 366 577 IPR011990 GO:0005515
Sto5g1296 577 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 115 564 - -
Sto5g1296 577 Pfam Tetratricopeptide repeat 457 492 - -
Sto5g1296 577 Pfam Tetratricopeptide repeat 413 449 - -
Sto5g1296 577 SUPERFAMILY TPR-like 260 483 IPR011990 GO:0005515
Sto5g1296 577 ProSiteProfiles TPR repeat profile. 200 233 IPR019734 GO:0005515
Sto5g1296 577 SUPERFAMILY TPR-like 126 272 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1296 - - aprc:113852595 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1296 5 8837289 8841394 Sto5g1296 5 8837289 8841394 ECH