Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1245 ATGGAGGGCGGCGCAGGAAGAGATTTGGAATGCCAGAAGATTATGGATGGGAAGGCGAGTGACAGGAGTGCTGTAGAGAAGGGAATTCCTTCCTGTTGCTTGAAGGCTATGGCTTCAGCTCCTGAGCTTGAGGCGAAGTGTCATTCTACTGTTGTTTCTGGGTGGTTCTCAGAATCTAAGTCTTGCTCTGGAATATCTAGATATTTCAACAACCCAATGTGGCCTGGAGAAGCACACTCAATCAAAGTGGAGGAAATCTTGTACAAAGAAAGGTCAGAGTATCAAGAGGTTTTGGTTTTCAAGTCGTCAACATATGGAAAAGTGCTTGTTCTTGATGGGATTGTTCAATTGACTGAGAAAGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTTTGTTCAATTCCATCTCCTAAAACAGTTCTGGTTGTTGGTGGTGGAGATGGTGGGGTTCTAAGGGAAGTATCCCGCCACAGTTCTGTGGAGCATATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAAGAAGTATTTTCCAGAGTTAGCTGTTGGATTTGAAGATCCTCGAGTACACCTTCATGTTGGTGATGCTATTGAGTTTCTTCGACAAGCTCCTGAAGGGAAGTATGATGCTATCATTGTTGATTCGTCAGATCCTGTGGGTCCTGCCCAGGAACTAGTAGAGAAGCCATTTTTTGAGACAATAGCTAAGGCATTGAAGCCTGGTGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCTTCATACACACCTTATTCAAGATATGATCTCCATTTGCCAAGAAATATTTAAAGGTTCTGTGCATTATGCATGGGCAAGTGTTCCAACATATCCGAGTGGTGTGATTGGTTTTCTTCTATGCTCTACGGAGGGGCCACCTGTTGATTTTGTAAACCCCATCAACCCCATTGAGAAGGTGGAAGGTGCAATAGAGCACAAAAGAGAACTTAGGTTTTATAACTCAGAGATGCATTCAGCTGCTCTTGCCTTGCCAGCATTTCTGAAGATGGAGTTGAACTTGATGAGGAGATTAGCTTCTATGTTGAAACCTTTTAGTGATTGA 1098 0.4271 MEGGAGRDLECQKIMDGKASDRSAVEKGIPSCCLKAMASAPELEAKCHSTVVSGWFSESKSCSGISRYFNNPMWPGEAHSIKVEEILYKERSEYQEVLVFKSSTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREVSRHSSVEHIDICEIDKMVIDVSKKYFPELAVGFEDPRVHLHVGDAIEFLRQAPEGKYDAIIVDSSDPVGPAQELVEKPFFETIAKALKPGGVLCNMAESMWLHTHLIQDMISICQEIFKGSVHYAWASVPTYPSGVIGFLLCSTEGPPVDFVNPINPIEKVEGAIEHKRELRFYNSEMHSAALALPAFLKMELNLMRRLASMLKPFSD 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1245 365 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 143 156 IPR030373 -
Sto5g1245 365 TIGRFAM speE: spermidine synthase 76 345 IPR001045 GO:0003824
Sto5g1245 365 CDD AdoMet_MTases 164 250 - -
Sto5g1245 365 Hamap Polyamine aminopropyltransferase [speE]. 54 351 IPR001045 GO:0003824
Sto5g1245 365 Gene3D Spermidine synthase, tetramerisation domain 46 116 IPR037163 -
Sto5g1245 365 PIRSF Spermidine_synth 42 355 IPR030668 GO:0006595
Sto5g1245 365 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 301 IPR030374 -
Sto5g1245 365 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 357 IPR001045 GO:0003824
Sto5g1245 365 Pfam Spermidine synthase tetramerisation domain 71 119 IPR035246 -
Sto5g1245 365 Gene3D Vaccinia Virus protein VP39 117 352 IPR029063 -
Sto5g1245 365 Pfam Spermine/spermidine synthase domain 122 307 - -
Sto5g1245 365 PANTHER SPERMINE SYNTHASE 1 357 - -
Sto5g1245 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 68 347 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1245 Sto-Chr5 8432770 8436346 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1245 K00797 - mnt:21386265 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1245 5 8432770 8436346 Sto5g1245 5 8432770 8436346 ECH