Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1235 ATGGGAGTTGTTACTATATCTAGCTCAGCTGCACGGACTCCATTAggattaaatacaaaattttcaaGTCATTGGCCTGCACTGAAGAAACCCACAATTGTAGCATTTAAAGAAGATAAATCCAATAAAACAGCTTTGGCTGCACCCCAAGAGAAAATTCCTCTGCCCATAGAAACAGTTGATGCACACCGGAAAAGGATaggaaaaactaaaaaattaccAAAGAGAGTGAGAGCTATCTTTACAGATGAAGCATCTCCATCCACCCTGGATGTGGACTACAACGAAGCTGCTGCCAAACTTGAAAATATTTACAAACTAAGCACAGAATCTGATACTTGTAATGTGGAAGATATAGATGGCAGGACCAAAAGAGTCTTgcggagaaggaagaagactgGTGATGATGATCAGATAGATAATGATTGTGTGATtagaaacaaaaataagaaGGCCAAACGAATGACTCTTGATAAGAGGATTGCAATGAAAAACAACAAGAAAGAGGATGTAGTTGTTCCGacgaggaagaaaagaaatgttAAGAGTAGAGTTGAAAAAATTGAGGAGCTTGTCAGGGAATATTCTGCATCAATCGATTTAGTCAGCTTGGATtggaaaaaaatgaagatacCTCCTGTTCTTCCCTCTTCAGAGCATACTTGGTTGTTCAAGTTGATGCAGCCTATGAAgGCACTTCTTCAATTAAAAGAAGATTTACAAAAGGATCTTGGGAGAGAACCAACAGAAGGTGAACTAGCTGATGCAACAAACATGAACACCATTCAAGTGAAAAAGGCAATAGAGGTTGGTCGAGCAGCACGGAACAAACTCATAAAGCACAATCTTCGGCTTATCTTATTTGTGatcaataaatattttcaagATTTTGCAAATGGCCCACGGTTCCAAGATCTTTGTCAGGCAGGAGTTAAGGGACTTATCACAGCAGTTGATCGTTTTGAGCCAAAAAGAAGATTTCGCTTATCCACATACGGTTTATTTTGGATAAGACATGCCATCGTTCGTTCCATGACCCTCTCAAGCTTCACTCGTGTTCCCTTTGGACTTGAATCTGTTAGAGTCGACATCCAAAGAGCTAAACTGGAGTTAACATTTGAGCTTCAAAGGCCACCAACAGAGGAAGAGATTATAGAAAGAGCTGGGATCTCTCCTGAAAGATACCATGAAGTAGTGAAGGCCTCAAAACCTATTCTTTCCCTCCATTCAAGGCATGCAACGACACAAGAGGAGTTTATTGATGGGATCACTGATTTTGAAGGTGTTAATGGTGATGGCAGGAGACAGCCTGAAGTTCTTAGGCTTGCTCTTGATGATGTGCTTGATTCACTGAAGCCAAAGGAGAGCTTGGTGATCAGACTGAGATACGGACTTGATGGTAAGGGTGAGAGAACATTAGGAGAAATCGCTGGGAACTTGAATATTTCAAGGGAAATGGTAAGGAAGCACGAAATCAAGGCTCTGATGAAGCTCAAGCATCCAGCTCGGTTGGACTATCTTCGTCGTTATGTTGTATAG 1539 0.3814 MGVVTISSSAARTPLGLNTKFSSHWPALKKPTIVAFKEDKSNKTALAAPQEKIPLPIETVDAHRKRIGKTKKLPKRVRAIFTDEASPSTLDVDYNEAAAKLENIYKLSTESDTCNVEDIDGRTKRVLRRRKKTGDDDQIDNDCVIRNKNKKAKRMTLDKRIAMKNNKKEDVVVPTRKKRNVKSRVEKIEELVREYSASIDLVSLDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQLKEDLQKDLGREPTEGELADATNMNTIQVKKAIEVGRAARNKLIKHNLRLILFVINKYFQDFANGPRFQDLCQAGVKGLITAVDRFEPKRRFRLSTYGLFWIRHAIVRSMTLSSFTRVPFGLESVRVDIQRAKLELTFELQRPPTEEEIIERAGISPERYHEVVKASKPILSLHSRHATTQEEFIDGITDFEGVNGDGRRQPEVLRLALDDVLDSLKPKESLVIRLRYGLDGKGERTLGEIAGNLNISREMVRKHEIKALMKLKHPARLDYLRRYVV 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1235 512 Pfam Sigma-70, region 4 447 500 IPR007630 GO:0003700|GO:0006352|GO:0006355
Sto5g1235 512 Coils Coil 178 198 - -
Sto5g1235 512 Gene3D - 268 346 - -
Sto5g1235 512 CDD Sigma70_r4 441 499 - -
Sto5g1235 512 Gene3D - 351 403 IPR036388 -
Sto5g1235 512 Gene3D - 225 267 IPR036388 -
Sto5g1235 512 PRINTS Major sigma-70 factor signature 305 318 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto5g1235 512 PRINTS Major sigma-70 factor signature 329 337 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto5g1235 512 PRINTS Major sigma-70 factor signature 451 463 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto5g1235 512 PRINTS Major sigma-70 factor signature 472 487 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto5g1235 512 PRINTS Major sigma-70 factor signature 487 498 IPR000943 GO:0003700|GO:0006352|GO:0006355
Sto5g1235 512 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 353 416 IPR013324 -
Sto5g1235 512 Pfam Sigma-70 region 2 278 343 IPR007627 GO:0003700|GO:0006352|GO:0006355
Sto5g1235 512 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 438 510 IPR013324 -
Sto5g1235 512 Pfam Sigma-70 region 3 362 425 IPR007624 GO:0003700|GO:0006352|GO:0006355
Sto5g1235 512 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 512 - -
Sto5g1235 512 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 198 345 IPR013325 GO:0003700|GO:0006352|GO:0006355
Sto5g1235 512 Gene3D - 435 512 IPR036388 -
Sto5g1235 512 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 274 500 IPR014284 GO:0003700|GO:0006352|GO:0006355
Sto5g1235 512 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 512 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1235 K03093 - gmx:100796580 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1235 5 8314462 8317589 Sto5g1235 5 8314462 8317589 ECH