Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1165 ATGTCTGGCGGGATCGCGCGTGGTCGTCTTGCGGAGGAGCGAAAAGCCTGGCGTAAGAATCACCCACATGGTTTCGTGGCGAAGCCAGAATCCGGATCGGATGGCTCTGTGAATTTGATGGTGTGGCACTGCATTATCCCTGGCAAGGCCGGAACTGACTGGGAGGGAGGCTACTACCCCCTTACTCTTCACTTTAGTGAGGATTACCCCAGTAAGCCACCAAAGTGCAAATTTCCTCAAGGTTTCTTTCATCCTAATGTCTATCCTTCAGGAACTGTATGCCTGTCAATTCTTAATGAGGATAGTGGTTGGAGACCGGCCATTACTGTGAAGCAAATTCTTGTGGGCATTCAGGATCTCCTGGACCAACCCAATCCTGCTGATCCTGCACAAACTGAAGGGTACCAGCTTTTCATCCAGGATTCTGTTGAATATAGAAGAAGGGTGCGGCAGCAAGCCAAACAATACCCACCTGTTCTTTAG 483 0.499 MSGGIARGRLAEERKAWRKNHPHGFVAKPESGSDGSVNLMVWHCIIPGKAGTDWEGGYYPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYQLFIQDSVEYRRRVRQQAKQYPPVL 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1165 160 SMART ubc_7 8 158 - -
Sto5g1165 160 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 83 98 IPR023313 -
Sto5g1165 160 PANTHER - 3 158 - -
Sto5g1165 160 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 158 - -
Sto5g1165 160 Pfam Ubiquitin-conjugating enzyme 9 151 IPR000608 -
Sto5g1165 160 SUPERFAMILY UBC-like 5 156 IPR016135 -
Sto5g1165 160 Gene3D Ubiquitin Conjugating Enzyme 1 158 IPR016135 -
Sto5g1165 160 CDD UBCc 9 153 IPR000608 -
Sto5g1165 160 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 158 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1165 Sto-Chr5 7796276 7797861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1165 6 158 Miscellaneous Gene Families AT3G17000 28.205 3.89e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1165 K10577 - cpap:110811667 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1165 5 7796276 7797861 Sto5g1165 5 7796276 7797861 ECH