Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0990 ATGGGTGAGGCTACACAGGTATTGTACCTCAGTAGTACtactactaataataataataataataatggacaCTCAAAATTTGATTATGAACTTCAACAAAATTTCAGCACCGCCTCTTGCTCCTGGTATGAGGAACTCATCGACGACCATCTCAAATGGTCTTTTGCACTCAATAGTGTGCTCCATAAAGGGATCAGCCAGTACCAGGAGATAGCTCTCTTAGACACGAAGCATTTTGGCAAGGCATTGGTGATTGATGGGAAGATGCAGAGTGCTGAATCTGATGAATTCATTTATCACGAATGCTTGATTCACCCCACCCTCTTATGCCACCCCGaCCCCAAAAGTGTATTTATAATGGGAGGAGGGGAAGGTTCTGCAGCTAGAGAAGCGTTGAAGCACAAGTCAATGGAGAGAGTGGTGATGTGCGATATAGACCAGGAAGTGGTAGATTTCTGCCGTAAATACTTGACTGTAAATAAGGACGCCTTTTCTCATAAGAAGCTTGATCTTGTTATCAATGATGCCAAGGGAGAATTAGAGCAGAGAAAGGAGAAGTATGATATAATTGTAGGAGATTTGGCAGACCCAGTTCAAGGAGGGCCTTGCTATCAACTCTACACTAAATCCTTCTATGAGAATAtcctcaaacccaagctcaataaCAATGGCATTTTCGTCACCCAGGCTGGACCGGCAGGCATCCTCAGCCACAAGGAGGTCTTCACTTCCATATACAATACAACCAAACAGGTCTTCAAATATGTGACGGCATACACGGCTCATATACCATCTTTTGCTGATACATGGGGATGGGTTATGGCTTCGGACAAACCATTTTTGATTGAAGCTGAGGAAATGGACAAAAGAATCGAAGCTAGGATAGATGGGGAATTGCTCTATCTCAATGGCTCCTGGTTCCACTCTTCTGCCACCATGAATAAGACTGTTTCACAATCGCTGCGAAATGAAACCCATGTGTACACGGAAGAAGATGCTAGATTTGTTCATGGACATGGCGTGGCTTATCGACTCTGA 1038 0.42 MGEATQVLYLSSTTTNNNNNNNGHSKFDYELQQNFSTASCSWYEELIDDHLKWSFALNSVLHKGISQYQEIALLDTKHFGKALVIDGKMQSAESDEFIYHECLIHPTLLCHPDPKSVFIMGGGEGSAAREALKHKSMERVVMCDIDQEVVDFCRKYLTVNKDAFSHKKLDLVINDAKGELEQRKEKYDIIVGDLADPVQGGPCYQLYTKSFYENILKPKLNNNGIFVTQAGPAGILSHKEVFTSIYNTTKQVFKYVTAYTAHIPSFADTWGWVMASDKPFLIEAEEMDKRIEARIDGELLYLNGSWFHSSATMNKTVSQSLRNETHVYTEEDARFVHGHGVAYRL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0990 345 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 40 320 IPR029063 -
Sto5g0990 345 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 38 344 - -
Sto5g0990 345 PANTHER BNAA02G04280D PROTEIN 38 344 - -
Sto5g0990 345 Hamap Polyamine aminopropyltransferase [speE]. 41 322 IPR001045 GO:0003824
Sto5g0990 345 Pfam Spermine/spermidine synthase domain 96 276 - -
Sto5g0990 345 Gene3D Vaccinia Virus protein VP39 93 344 IPR029063 -
Sto5g0990 345 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 40 277 IPR030374 -
Sto5g0990 345 CDD AdoMet_MTases 121 229 - -
Sto5g0990 345 Pfam Spermidine synthase tetramerisation domain 42 93 IPR035246 -
Sto5g0990 345 Gene3D Spermidine synthase, tetramerisation domain 41 92 IPR037163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0990 Sto-Chr5 6682771 6685408 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0990 K18787 - gmx:100815510 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0990 5 6682771 6685408 Sto5g0990 5 6682771 6685408 ECH