Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0964 AtgcctctgcctctgcctcccattcccattcccattcccaatcACTTTTCCCTTCTCCGCCACGCCATAGCCACCTCCAACTTGCTGCTTGGAAAGTGCACACACGCGTGTATTCTGAAATCACAACAATCCCAAGATCCTTTTTTGACCAACAATCTCATTACCATGTACACCAAAAATGGCTCACTACAATCAGCACGTCGTCTTTTTGATATAGCCCCTCGAAGAGACCTTATTACCTGGAACGCCATTCTCTCTGCACACACCGAGCCTGAGAATATCCAGGAAGGTTTTTACCTTTTCCGTCTTCTTCGGAAATCTCTTGTTTTGACTAGTCCTCACACTTTGGCCCCTGTCTTTAAGATGTGTCTTCTCTCAGGTTATCTCTGGGCTTCACAGGCTCTACATGCGTATGCTGTGAAGATAGGTTTGGAATGGGACGTGTTTGTTTCTGGAGCTTTGGTGAATATATACTCTAAATTTCGACGAATCAGAGAGGCTCGAATACTTTTTGATGGGATACCTTTAAGGGATGTTGTACTGTGGAATGTTATGATGAAGGCCTATGTGGAAATGGGTCTTCAGGAACAAGCTCTGCTTCTCTTCTCTGCGTTTCACCGAAGTGGGCTGCGTTTCCATGACATCAGCATCTGCAATCTTCTTATGGGAGTAAGAAAAATGGGATTTGAAAGGCAGTTAAATCAGCTTCAAgcttatatgattaaattgTTTCCCTTTGATGATGCTTCTGATGATGTAATCTTGTGGAACAAGGCTTTGTCTGACTATCTCCGAGAAGGTGAAGTTTGGATGGCTATTGATTGCTTTATGGATATGATCAGATCAAAAGTAGCATATGATAGCATGACGGTTGTTTTGATTCTTTCTGTGGTTGCTAGTATAAACCATCTTGGGCTGGGAAAACAGATTCATAGCACAATCGTGAAATCAAGGCTGGATCAAGTTGTCTCCGTTGCAAATAGTCTTCTCAATATGTACACAAAAGCAGATTCTGTGTGCAATGCAAAAAGAGTGTTCCATCATATGAAAGAAGTGGATTTGATATCATGGAACACAATGATATCTGGTTGTGCTCTCAGTGGTTTAGAGGAAGAGTCTATTGGCCTCTTTATCCATTTATTGCGCAGTGGTCTAATGCCAGATGAATTCACCATTGctagtgttttgaaagcttgctCCTCTCTTAAAGAAGGCTTCTGTCTTGGTAAACAGATTCATGTTCAATCAATTAAAACTGGTACTGTCATTGATTCATTTGTCTCAACATCTCTAATTGATGTCTATTCTAAGAGTGGAATGATGGAGGAGGCAGAATTCCTTTTCCAAAACCAAGATGGATTTGATTTGGCAACATGGAATGCCATGATGTTTGGATACATAACCAGCAACGAAAATCACAAAGCTTTAAGGCTCTTTAGTTTACTGCATCAAAGAGGAGAAAAGGCAGATCATATCACTATGGCAAATGCAGCTAAAGCCTCAGGGTGCTTAGTTGGGCTTCAACAAGGGAAGCAAACTCATGCTGTTGTTATAAAAAGGGGATTCAATTTAGATTTGCATGTGATTAGTGGTATTCTAGGCATGTATCTAAAATGTGGAGAATTGGGATATGCACAGAGAGTTTTCAATGAGATCCCCATGCCTGATGATGTTGCATGGACTACTATGATCTCAGGATGCGTGGAAAATGGAGATAATGAACATGCTTTTCCAGTATACCAAAAGATGAGGCTCTCTGGGATCCAACCTGATGAGTATACTTTTGCTTCCCTAGTCAAGGCTAGCTCACTTTTTACAGCATTAGAATTGGGGAAACAGATTCATGCCAATGTGATAAAGTTAGATTATGCCTTGGATCCTTATGTTATGACCGCACTTGTTGACATGTATGCCAAATGTGGGAACATAGAGGATGCATATGGcttatttaaaagaataagCATAAGGAGTATTTCCTTGTGGAATGCAATGTTGGTAGGATTGGCTCAACATGGAAATACTGAAGAAGCACTTCATGTTTTCAAAGAAATGAAATCTTGGGGTGCAATGCCAGATAGAGTTACTTTCATTGGGGTTCTTTCTGCTTGTGGTCATTCAGGTTTGGTATCAGAGGCGTACCGAAATTTTTGTTCAATGCAGAAAGATTATGGCATTGAAGCTGAGGTTGAGCATTACTCTTGTCTAGTTGACGCCCTTAGCCGTGCAGGGAGAGTTCAAGAAGCTGAAAAGGTGATGCTATCAATGCCCGTGGAAGCGTCTGCTTCAATGTATAGGGTTCTGCTTAATGCTTGTAGGGTTCAAGAAGACAAAGAGACAGGAAAACGTGTGGCAGAAAAGATTTTTTCATTGCAGCCATCGGATTCAGCAGCTTATGTTCTTTTGTCCAATATTTATGCTGCTGCTAACCAATGGGACAATGCGTCAAGTGCTAGAAATATGATGAAAAGGATTCATGTCAAAAAGGATCCGGGATTTAGTTGGGTAGATGTGAAGAACAAAGTGCATTTGTTTGTAGCTGGTATGCTCTTCGAAGATTTATTGAAGTTGAAGTGTCCTACACcttcaaagaaagaaattagtGTGCTGATCAACTTGCTAAGCTTTCTCTTTTGA 2634 0.3926 MPLPLPPIPIPIPNHFSLLRHAIATSNLLLGKCTHACILKSQQSQDPFLTNNLITMYTKNGSLQSARRLFDIAPRRDLITWNAILSAHTEPENIQEGFYLFRLLRKSLVLTSPHTLAPVFKMCLLSGYLWASQALHAYAVKIGLEWDVFVSGALVNIYSKFRRIREARILFDGIPLRDVVLWNVMMKAYVEMGLQEQALLLFSAFHRSGLRFHDISICNLLMGVRKMGFERQLNQLQAYMIKLFPFDDASDDVILWNKALSDYLREGEVWMAIDCFMDMIRSKVAYDSMTVVLILSVVASINHLGLGKQIHSTIVKSRLDQVVSVANSLLNMYTKADSVCNAKRVFHHMKEVDLISWNTMISGCALSGLEEESIGLFIHLLRSGLMPDEFTIASVLKACSSLKEGFCLGKQIHVQSIKTGTVIDSFVSTSLIDVYSKSGMMEEAEFLFQNQDGFDLATWNAMMFGYITSNENHKALRLFSLLHQRGEKADHITMANAAKASGCLVGLQQGKQTHAVVIKRGFNLDLHVISGILGMYLKCGELGYAQRVFNEIPMPDDVAWTTMISGCVENGDNEHAFPVYQKMRLSGIQPDEYTFASLVKASSLFTALELGKQIHANVIKLDYALDPYVMTALVDMYAKCGNIEDAYGLFKRISIRSISLWNAMLVGLAQHGNTEEALHVFKEMKSWGAMPDRVTFIGVLSACGHSGLVSEAYRNFCSMQKDYGIEAEVEHYSCLVDALSRAGRVQEAEKVMLSMPVEASASMYRVLLNACRVQEDKETGKRVAEKIFSLQPSDSAAYVLLSNIYAAANQWDNASSARNMMKRIHVKKDPGFSWVDVKNKVHLFVAGMLFEDLLKLKCPTPSKKEISVLINLLSFLF 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0964 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 657 691 IPR002885 -
Sto5g0964 877 Pfam E motif 776 836 IPR046848 -
Sto5g0964 877 SUPERFAMILY TPR-like 179 816 IPR011990 GO:0005515
Sto5g0964 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Sto5g0964 877 Pfam PPR repeat 355 385 IPR002885 -
Sto5g0964 877 Pfam PPR repeat 731 755 IPR002885 -
Sto5g0964 877 Pfam PPR repeat 256 283 IPR002885 -
Sto5g0964 877 Pfam PPR repeat 630 653 IPR002885 -
Sto5g0964 877 Pfam PPR repeat 180 209 IPR002885 -
Sto5g0964 877 Pfam PPR repeat 429 449 IPR002885 -
Sto5g0964 877 Pfam PPR repeat 458 486 IPR002885 -
Sto5g0964 877 Pfam PPR repeat 51 71 IPR002885 -
Sto5g0964 877 Pfam PPR repeat family 658 703 IPR002885 -
Sto5g0964 877 Pfam PPR repeat family 555 601 IPR002885 -
Sto5g0964 877 PANTHER - 203 847 - -
Sto5g0964 877 PANTHER - 13 202 - -
Sto5g0964 877 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 13 202 - -
Sto5g0964 877 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 203 847 - -
Sto5g0964 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 556 590 IPR002885 -
Sto5g0964 877 TIGRFAM PPR: pentatricopeptide repeat domain 732 755 IPR002885 -
Sto5g0964 877 TIGRFAM PPR: pentatricopeptide repeat domain 660 692 IPR002885 -
Sto5g0964 877 TIGRFAM PPR: pentatricopeptide repeat domain 558 592 IPR002885 -
Sto5g0964 877 TIGRFAM PPR: pentatricopeptide repeat domain 355 389 IPR002885 -
Sto5g0964 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Sto5g0964 877 Gene3D Tetratricopeptide repeat domain 410 500 IPR011990 GO:0005515
Sto5g0964 877 Gene3D Tetratricopeptide repeat domain 133 241 IPR011990 GO:0005515
Sto5g0964 877 Gene3D Tetratricopeptide repeat domain 11 132 IPR011990 GO:0005515
Sto5g0964 877 Gene3D Tetratricopeptide repeat domain 254 406 IPR011990 GO:0005515
Sto5g0964 877 Gene3D Tetratricopeptide repeat domain 606 844 IPR011990 GO:0005515
Sto5g0964 877 Gene3D Tetratricopeptide repeat domain 501 605 IPR011990 GO:0005515
Sto5g0964 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0964 Sto-Chr5 6486456 6489666 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0964 252 847 Glycoside Hydrolase AT3G49170 33.333 1.29e-114 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0964 - - gmx:102661570 1153.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0964 5 6486456 6489666 Sto5g0964 5 6486456 6489666 ECH