Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0918 ATGGGTGCCGATGCTGGTTCTAGTAAAGGTAGTGGCAAGTATTCCAACGCGTCTGATATGGATATAGAGGAAAACGATCAAGACTTGTCAAATATAATGGAATTGGGGGaagaaaatcttaaaaatttttgTAAGAAGGCTACCATGCTATTTTTTGATGAGTACGGGCTGATCAGTCACCAGATCGATTCCTACAATGAGTTCATCAACAGCGGTCTGCAGAATGTGTTCGAGTCATTTGGTGAGCTCATTATTGAGCCCGGGTATGATCCCTCAAAGAAAGGTGAAGGTGACTGGCGATATGCTTCAGTGAGGTTTGGGAAGGTCACCCTTGATAAGCCAACATTCTGGGGAGGTGAAGGAAATGCAAAAGAGTTCCAGATGCTTCCTAGGCATGCCCGGTTGCAGAGGATGACATATTcatcaaaaataaaagtggaagttCATGTTCAGGTGTATATCTTAAGGCTGGTTAGAAGTGACAAATTTAAAACTGGCAAAGAACAATACCTTGATAGAGAGATTATCAAGGAGGAGAATCGGGAAATAACTGTTGGGAGGTTGCCTGTCATGGTGAAGTCTGACATATGCTGGATGAAAGGAGCTGAAAAAGGTGATTGTGATTATGATCATGGAGGCTACTTTCTGGTCAAGGGTGCGGAGAAGACATTTATTGCACAAGAGCAAATTTATCCGAAGAGGCTATGGATCATAAATAGCCCATTTTGGACAGTTTCCTACAAGTCACTAGTGAAGAGAAATAGGTTAATTATCAAGCTGGCAGGAAATACTCGAAGTGAAGATATTAAAGGTGGAGAGAAGGTCCTTACAGTATATTTTTTGTCAGTTGAGATTCCAGTATGGATACTATTTTTTGCTTTTGGTGTCTCTTCAGACAGAGAGGCTATAGAGCTCATTGATTATTGCAAAGCTGATGCCAGCattcaaaatattctttttgCTTCCATTCGTGATGCTGATGAGAGTTGTGAAGGATTTCGTAAAGGGAATCTAGCCCTTAGTCACATAGAAGGACTGATAAAAAGTAGCAAATTTCCACCTACAGAATCTGTTGAAGAGTGTCTGAGTATGTATGCCTTTCCAAACATTAGAGGCTCAAAGAGAAAGGCACGCTTCCTTGCATATATGGTCAAGTGTCTACTATTGGCCTATACTGGCCGCCGAAAATGTGATAACAGGGATGATTTCAGAAACAAACGGCTTGACTTGGCCGGTGAGCTGCTTGAGCGGGAGCTGAGAGTGCATATTGCTCATGCTCGGAAGCGTATGGCAAAGGTTTTGCAAAGAGACCTTTATGGAGATCGTGATGTGCGCCCTATTGAGCACTATCTTGATGCTTCAATAATTACTAACGGTCTCCAAAGAGCATTCTCAACTGGAGCCTGGTCACATCCCTTTAAAAGAATGGAAAGGATTTCTGGTGTGGTCGCAAATCTTGGGCGAACCAATCCTTTGCAGACCATGGCGGAAATGAGAAGAACGAGGCAACAAGTTCAATACACAGGGAAGGTTGGAGATGCTAGATACCCGCATCCTTCTCACTGGGGTAAGGTGTGTTTCCTCTCTACCCCTGATGGAGAAAATTGTGGGCTTGTAAAGAATTTGGCTGTTACAGGACTAGTTAGTTCGAATGCACCACAATCTATACTACCTCAGTTGTTCGATTGTGGAATGGAAGAGCTGGTGGATGATACATCTACTAAACTGGATGGAATGGACAAAGTCTTCCTAAACGGGGATTGGGTTGGAGTGTGTGCAAACACCACTTCTTTTGTGGAAGGGCTAAGAAATAAACGACGTCGAAGTGAATTGCCTCCTCAGGTGGAAATTAAAAGAGATCAAGTTCAACAAGAAGTGCGCATATACTCTGATGCTGGAAGGATTTTGCGCCCTCTTTTAGTTGTTGATAATTTAGGCAAGATTAAAGGTTCTAAATGGGAGCAGCACTCCTTCCGGTCTCTTTTAGATAAAGGAGTTATTGAACTCATTGGAccggaagaagaagaagactgcTTAACCGCTTGGGGTGCTCAATATTTGTTTGTCAGAGATGCCAAAAGTTCTGTGAAGTATACGCATTGTGAACTCGATATGTCGTTTTTATTGGGTTTAAGCTGTTCACTTGTGCCGTTTGCGAATCATGATCATGCAAGGAGGGTGCTTTACCAGTCTCAAAAGCATTCCTCACAGGCTATTGGTTTCTCTACGACGAACCCAAGCATTAGAGTTGACACATTGTCGCACCAGTTACATTATCCTCAGAAGCCCCTTTTCAAAACAATGACTTCTGACTGTCTTGGAAAAGCAGAATATCCCCTAAATAATATGATACTTCCAAAGCCTGAATTTTATAATGGGCAGAATGCAATTGTGGCCGTCAATGTACATTTGGGGTACAACCAAGAGGATTCCCTTGTGATGAATCGTGCATCTTTGGAGCGTGGTATGTTCAGATCTGAGCACATCAGGAGTTACAAAGCTGAAATTGATAATAAGGATTCATCAGAAAAGAAGCGGAAACCTGATGACATTGTAAATTTTGGAAAGATACAAAGTAAAATTGGTCGTGTCGATAGCTTGGATGACGATGGCTTTCCATATGTTGGTGCGAATTTGCAGAGCGGTGATATTATTATTGGGCGTTGTGCAGATTCAGGGACTGATCATAGTATAAAGCTAAAACACACAGAAAGGGGATATGTTCAGAAAGTTGTATTGTCATCAAATGATGAGGGGAAAAATTTTGCTGTGGTTTCTTTGAGACAGGTTCGGAGCCCCGTTCTTGGAGACAAGTTCTCTAGTATGCATGGACAAAAAGGTGTGTTAGGATTTCTGGAGTCTCAGGAGAACTTCCCTTTTACAATACAAGGTATTGTTCCTGATATTGTTATAAACCCACATGCATTTCCCTCCCGACAAACTCCTGGGCAACTCCTAGAAGCTGCTTTAGGAAAGGGGATCGCTTGTGGTGGTTCTTTGAGACACGCCACCCCTTTCTCCACGCTCTCTGTTGAAGACCTTACCGACCAGCTTCACAGAGCTGGATTTTCAAGATGGGGAAATGAGAGAGTATACAATGGGAGAACTGGTGAGATGGTCCGTTCACTTATATTCATGGGGCCAACATTCTACCAGCGACTGCACCACATGTCCGAGGACAAAGTAAAATTCCGCAACACAGGTCCAGTTCACCCGTTAACCCGGCAGCCTGTGGCAGACAGAAAGCGTTTTGGTGGTGTCAAGTTTGGTGAAATGGAGCGCGACTGCTTGATAGCTCATGGTGCATCAGCCAACCTGCATGAGCGCCTCTTTACTCTCAGTGACTCTTCCCAGATGCACATTTGCAGGAAATGCAAAAATGTTGCAAATGTGATCCTACGGCCAGTGGCTGGTGGCCGTAAAATAAGGGGTCCCTACTGTCGGTTCTGCGAATCAGTTGATGACATTGTTAAGGTCAGTGTACCCTATGGAGCCAAGTTATTGTGCCAGGAGCTTTTCAGCATGGGCATAAGTCTTAAATTTGAGTCCGAGCTCTGCTAG 3561 0.4271 MGADAGSSKGSGKYSNASDMDIEENDQDLSNIMELGEENLKNFCKKATMLFFDEYGLISHQIDSYNEFINSGLQNVFESFGELIIEPGYDPSKKGEGDWRYASVRFGKVTLDKPTFWGGEGNAKEFQMLPRHARLQRMTYSSKIKVEVHVQVYILRLVRSDKFKTGKEQYLDREIIKEENREITVGRLPVMVKSDICWMKGAEKGDCDYDHGGYFLVKGAEKTFIAQEQIYPKRLWIINSPFWTVSYKSLVKRNRLIIKLAGNTRSEDIKGGEKVLTVYFLSVEIPVWILFFAFGVSSDREAIELIDYCKADASIQNILFASIRDADESCEGFRKGNLALSHIEGLIKSSKFPPTESVEECLSMYAFPNIRGSKRKARFLAYMVKCLLLAYTGRRKCDNRDDFRNKRLDLAGELLERELRVHIAHARKRMAKVLQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGAWSHPFKRMERISGVVANLGRTNPLQTMAEMRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSSNAPQSILPQLFDCGMEELVDDTSTKLDGMDKVFLNGDWVGVCANTTSFVEGLRNKRRRSELPPQVEIKRDQVQQEVRIYSDAGRILRPLLVVDNLGKIKGSKWEQHSFRSLLDKGVIELIGPEEEEDCLTAWGAQYLFVRDAKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPSIRVDTLSHQLHYPQKPLFKTMTSDCLGKAEYPLNNMILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEIDNKDSSEKKRKPDDIVNFGKIQSKIGRVDSLDDDGFPYVGANLQSGDIIIGRCADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSLRHATPFSTLSVEDLTDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKNVANVILRPVAGGRKIRGPYCRFCESVDDIVKVSVPYGAKLLCQELFSMGISLKFESELC 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0918 1186 Pfam RNA polymerase Rpb2, domain 3 486 545 IPR007645 GO:0003677|GO:0003899|GO:0006351
Sto5g0918 1186 Gene3D - 744 932 IPR014724 GO:0003899
Sto5g0918 1186 Pfam RNA polymerase Rpb2, domain 5 658 704 IPR007647 GO:0006351
Sto5g0918 1186 Gene3D - 398 576 - -
Sto5g0918 1186 Gene3D - 50 234 - -
Sto5g0918 1186 MobiDBLite consensus disorder prediction 1 20 - -
Sto5g0918 1186 Pfam RNA polymerase Rpb2, domain 6 713 1083 IPR007120 GO:0003677|GO:0003899|GO:0006351
Sto5g0918 1186 CDD RNA_pol_B_RPB2 57 1182 IPR015712 GO:0003899|GO:0006351|GO:0032549
Sto5g0918 1186 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 28 1183 IPR015712 GO:0003899|GO:0006351|GO:0032549
Sto5g0918 1186 Pfam RNA polymerase Rpb2, domain 7 1085 1182 IPR007641 GO:0003677|GO:0003899|GO:0006351
Sto5g0918 1186 Pfam RNA polymerase Rpb2, domain 4 582 643 IPR007646 GO:0003677|GO:0003899|GO:0006351
Sto5g0918 1186 Gene3D RNA polymerase alpha subunit dimerisation domain 1070 1184 - -
Sto5g0918 1186 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 40 1182 - -
Sto5g0918 1186 Gene3D RNA polymerase Rpb2, domain 2 241 397 IPR037034 GO:0003677|GO:0003899|GO:0006351
Sto5g0918 1186 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 28 1183 - -
Sto5g0918 1186 ProSitePatterns RNA polymerases beta chain signature. 936 948 IPR007121 GO:0003677|GO:0003899|GO:0006351
Sto5g0918 1186 Pfam RNA polymerase beta subunit 56 446 IPR007644 GO:0003677|GO:0003899|GO:0006351
Sto5g0918 1186 Pfam RNA polymerase Rpb2, domain 2 259 409 IPR007642 GO:0003677|GO:0003899|GO:0006351
Sto5g0918 1186 Gene3D - 714 1069 IPR037033 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0918 Sto-Chr5 6201181 6208560 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0918 - K16252 qsu:112011615 1952.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0918 5 6201181 6208560 Sto5g0918 5 6201181 6208560 ECH