Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0884 ATGGCGGCTAGACTGAAGAAAGAGATAGTGCTCTTAATTTTACAGTATTGTAGAGAGGAAGGTTTCATGGAAACTGCTCATACGCTTGAGCGTGAAAGTGGATGTTACTTTGACTTCAAACATTTCGAGGAGAAGGTGCTTGCTGGGAAATGGGACGACGCTGAGTCCTATCTATCCAACTTCACAAGCTTTGATGATAATAAGCACTCTACCAAAATCTACTTTGAACTCAGGAAACAGAAATTCCTAGAGGCATTGGAAAGGAATGAACGTGGGGAGGCTTTGAATATCCTCGTCAAGGATCTGAAAGTCTTCTCCCCAGGGCATGAAGATCTGCTGAAAGAAATGACTGTACTTCTAACTCTTGATAATATAAGGGAACATGAATCACTTTCAGCTTATGGAGACACAGATACTGTGAGGAAGATGTTGGTGAGTGATCTTAAGAGGCTGGCCTTTGCAAATCCACTGCTGCGAGAAAAGCTTAGGTTTCCTGCCGTCAGATCTCAAAGGTTACGCACTCTTTTAAATCAAAGCTTGAACTGGCAGCATCTACTTTGCCTAGATCCACATCCAGACCCTGAAATTCGAACCCTCTTCATAGACCATGTCTGTCGATTGAATGCAAATCGTCAGCGTCCCGTTAATAGCGACGGTAGCAGCTCATCTGTCGTGACGGATTTGCCACATATTGCTGCTGCTAATAAAaacaaagAAACTTGTCTGCAGGATCTAATTGGGAATCctgatgaaaatgaaatacCCCAACAAGGAAGTCCAAGCCAGGCATTAGATGAGGTAACATCGGAGGTTGAAAAAGACCTGCCGAAGATTATAGTTCAAACATTGAAAACTGAGTCGCCTCCTTCTACCTTGGATTTTCATCCAACTTTGCATACTCTAATTCTAGTTGGAACTCACAAGGGCGATATTGGGATCTGGGATGCTATTTCTGGCGACAATttgatttttatcaaattcgaaGTTTGGGACATTGAATCATACTCAACCAATTTGAAGGTGTCACTGGAGAAGGACTCGTATGTTTCTGTGAACAAAGTCATATGGAACCCTGATGGTGTATACTTTGGTAAGGGTATTGAGCTACTTAAGGTTGAAGCTCATGATGGGAATGTTAATGATATAGCATTCTCTACTATTAACGACCAATTCTTCATCGTTACTTGTGGTGACGATAAGACAGTCAAGGTGTGGGACGTGAATAGCGGTGAAAAATGTTATACCTTCGATGGTCACGATGCTCCAGTTTGTTCCATATGTCCCCACAAAAAGGAACAAGTGAATTTCATCTTTTCAACTTCAAGTAATGGAAACATCAAGGCATGGTTGTATGATATGTCGGGCGCCAGAGTTGATATTACTGCTCCAGGGTTCCAGTACGCTAAATTGGCTTACAGTGCTGATGATGAAAGGCTTTTCACCTGTGGGAATGGCAAGGAAGGAGAGCCATGTCTTGCAGAGTGGGATCATGATGAAGGGTTCATTAAAAGAGTGTATGAAGGACTTAAGGCTCCGTGTTTTTCTCCTATCCAGTTTGATACAACCAAGAATCGAGTTTTGGCTGCGGGAGATGATTATATGATCAAATATTGGGATATGGATAATGTCAAGCTTTCCACAAGCATTAATGTCGATGGAAGCCTACCCGCACATCCAAACATTCGGTTCAACAAAGAGGGGAAATTACTGGCAGTAACTGCAAAAGGAAATCAAGTGAAAATCTTGGCAGCCTCTGATTATGATATTTCAAAGCATCAAACTGAGATGCATTCTGTTCAAGCCTCTGCTAATGACGTTCAAAACTTGGGAGAGaATGAGAAGAATGCAGTCTCGGAGCCTGAAGAAGCCCACAacaaatcaaattttcagaatctCCTTGAAATTCCTAAATCTCAGTGTCACTTCTTGCAGCTTCCTGCTGTTCATCCCAAAGTAGACAAGATTCTCAAACTGTCTTTCACCAATGAGGGAAATGCCATTTTGGCATTAGCATCCAACGGTACTCATCTACTATGGAAATGGCCACGGGATGACCAGATGCAGGCAACTTCCCAAGGTTCCCCTAAGTTATGGCACCCACATAGGAACGCGAAATTATTTATGTGCAATGATGTTGCAAGCATCAACCCCACAGACTCGGTTCCTATTGCCTCTTTTGTTATATCAAAGAATGATTCATATCTTATTTCAACTTCTGGGGGTGCAATCTCCTTGTTTAATATGGTCACATTTAAGAATTTGTTAACTTTCATGACCCCACCGCCTAAGCCAACGGCTCTGGCCATCCATCCTCGAGATAATAATATGCTTGCTATAGGATTTGAGGATTCCAAGATACTTATATATAACGTCCGTACACATAAGGTCATAAAGCTTGAGGGCCACTCCCAAAGAGTCACTTCCCTTGCTTTCTCAAGCCTTTTGCATTCTCTTATTTCTGCTGATGTGGATGGTCAGATTTTTCTATGGAGTACCAACGGAtgggagaaagaaagagatatgTACCTGGAGATACATGCTGAGAACAAGCCAGAAGTACCATCTGATACTCACATTCAGTTCCACAATCAGCTGACGCACTTCCTTGCTGTACAAGATAGTCATCTTGGAATTTATGATGGAGTAGAACTAAAATGTGTCAAGAAGTGGGTTGCAGTACCTCCAGTGGTTATCTCCTATGCATCCTTCTCCTCCGATGGAAACAATGTGTATGCTGGTTTTGTTGATGGGAACTTCGCAATATTTGATTCTTACACTCTGCAACCTCGTTGTAGGATAAACCTCACTGCTTACAATTCCCCCACTTCAAGTGTAAGCATCTATCCAATGGTTATAGCTGCAAATCCAACGAAGGGAAGCCAGTTTTGTGTAGGGATGAGTGATGGTAATGTGTGGGTGTTTGAGCCAGCAGAGGCAGGACATGGGTGGACCAAAATTGCAGATGATGAGGAAGCAGCCAAAACCAAGGTTGTGGAAGTTAATGAATCTGGTGTGAAGTGA 3021 0.4154 MAARLKKEIVLLILQYCREEGFMETAHTLERESGCYFDFKHFEEKVLAGKWDDAESYLSNFTSFDDNKHSTKIYFELRKQKFLEALERNERGEALNILVKDLKVFSPGHEDLLKEMTVLLTLDNIREHESLSAYGDTDTVRKMLVSDLKRLAFANPLLREKLRFPAVRSQRLRTLLNQSLNWQHLLCLDPHPDPEIRTLFIDHVCRLNANRQRPVNSDGSSSSVVTDLPHIAAANKNKETCLQDLIGNPDENEIPQQGSPSQALDEVTSEVEKDLPKIIVQTLKTESPPSTLDFHPTLHTLILVGTHKGDIGIWDAISGDNLIFIKFEVWDIESYSTNLKVSLEKDSYVSVNKVIWNPDGVYFGKGIELLKVEAHDGNVNDIAFSTINDQFFIVTCGDDKTVKVWDVNSGEKCYTFDGHDAPVCSICPHKKEQVNFIFSTSSNGNIKAWLYDMSGARVDITAPGFQYAKLAYSADDERLFTCGNGKEGEPCLAEWDHDEGFIKRVYEGLKAPCFSPIQFDTTKNRVLAAGDDYMIKYWDMDNVKLSTSINVDGSLPAHPNIRFNKEGKLLAVTAKGNQVKILAASDYDISKHQTEMHSVQASANDVQNLGENEKNAVSEPEEAHNKSNFQNLLEIPKSQCHFLQLPAVHPKVDKILKLSFTNEGNAILALASNGTHLLWKWPRDDQMQATSQGSPKLWHPHRNAKLFMCNDVASINPTDSVPIASFVISKNDSYLISTSGGAISLFNMVTFKNLLTFMTPPPKPTALAIHPRDNNMLAIGFEDSKILIYNVRTHKVIKLEGHSQRVTSLAFSSLLHSLISADVDGQIFLWSTNGWEKERDMYLEIHAENKPEVPSDTHIQFHNQLTHFLAVQDSHLGIYDGVELKCVKKWVAVPPVVISYASFSSDGNNVYAGFVDGNFAIFDSYTLQPRCRINLTAYNSPTSSVSIYPMVIAANPTKGSQFCVGMSDGNVWVFEPAEAGHGWTKIADDEEAAKTKVVEVNESGVK 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0884 1006 Gene3D - 230 457 IPR015943 GO:0005515
Sto5g0884 1006 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Sto5g0884 1006 PANTHER TOPLESS-RELATED PROTEIN 1-LIKE ISOFORM X1 3 994 - -
Sto5g0884 1006 SMART Lish 5 37 IPR006594 GO:0005515
Sto5g0884 1006 SMART ctlh 35 93 IPR006595 -
Sto5g0884 1006 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 799 831 - -
Sto5g0884 1006 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 3 994 IPR027728 GO:0006355
Sto5g0884 1006 ProSitePatterns Trp-Asp (WD) repeats signature. 393 407 IPR019775 -
Sto5g0884 1006 Pfam WD domain, G-beta repeat 796 831 IPR001680 GO:0005515
Sto5g0884 1006 Pfam WD domain, G-beta repeat 371 406 IPR001680 GO:0005515
Sto5g0884 1006 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 415 IPR001680 GO:0005515
Sto5g0884 1006 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 372 411 - -
Sto5g0884 1006 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 469 685 IPR011047 -
Sto5g0884 1006 Gene3D - 848 991 IPR015943 GO:0005515
Sto5g0884 1006 Gene3D - 606 847 IPR015943 GO:0005515
Sto5g0884 1006 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 36 93 IPR006595 -
Sto5g0884 1006 SUPERFAMILY Peptidase/esterase 'gauge' domain 765 977 - -
Sto5g0884 1006 ProSiteProfiles Trp-Asp (WD) repeats profile. 799 831 IPR001680 GO:0005515
Sto5g0884 1006 Pfam LisH-like dimerisation domain 7 35 - -
Sto5g0884 1006 SUPERFAMILY WD40 repeat-like 283 831 IPR036322 GO:0005515
Sto5g0884 1006 SMART WD40_4 708 747 IPR001680 GO:0005515
Sto5g0884 1006 SMART WD40_4 365 406 IPR001680 GO:0005515
Sto5g0884 1006 SMART WD40_4 548 583 IPR001680 GO:0005515
Sto5g0884 1006 SMART WD40_4 499 539 IPR001680 GO:0005515
Sto5g0884 1006 SMART WD40_4 276 315 IPR001680 GO:0005515
Sto5g0884 1006 SMART WD40_4 792 831 IPR001680 GO:0005515
Sto5g0884 1006 SMART WD40_4 928 975 IPR001680 GO:0005515
Sto5g0884 1006 SMART WD40_4 409 450 IPR001680 GO:0005515
Sto5g0884 1006 SMART WD40_4 883 923 IPR001680 GO:0005515
Sto5g0884 1006 SMART WD40_4 750 790 IPR001680 GO:0005515
Sto5g0884 1006 Gene3D - 467 605 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0884 Sto-Chr5 5907943 5913368 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0884 - - gmx:100777441 1080.86