Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0828 TTGCAGGCTCTGCCGAATCAGCAAACTGTTGATTATCCGAGCTTCAAGCTTGTGATTGTCGGTGATGGTGGAACTGGGAAGACAACTTTCGTCAAAAGGCATCTTACAGGCGAATTTGAGAAGAAATACGAACCAACCATTGGTGTCGAAGTCCACCCATTGGATTTTTTCACCAACTGTGGGAAGATTCGATTCTACTGCTGGGATACTGCTGGACAAGAGAAATTTGGTGGCCTTAGGGATGGATACTATATTCATGGACAATGTGCCATTATCATGTTTGATGTCACTGCCCGGCTGACATACAAAAATGTTCCAACCTGGCACCGGGACCTTTGCCGGGTTTGTGAGAACATCCCAATTGTTCTTTGCGGTAACAAGGTTGATGTGAAGAACAGGCAGGTGAAGGCAAagcaagttactttccacaggAAGAAAAATTTGCAGTATTATGAGATATCTGCAAAGAGCAACTACAATTTTGAGAAACCTTTTCTGTATCTTGCCAGGAAACTTGCAGGTGATCCTAATTTGCACTTTGTAGAGTCTCCTGCCTTGGCTCCACCTGAAGTTCAAATTGATTTAGCAGCACAAGCACAGCATGAGCAGGAACTTGCTCAAGCTGCTAATCAGCCCCTTCCCGACGATGATGATGACGCATTTGAATAA 669 0.4305 LQALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQAQHEQELAQAANQPLPDDDDDAFE 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0828 222 ProSiteProfiles small GTPase Ran family profile. 8 172 IPR002041 GO:0003924|GO:0005525|GO:0006913
Sto5g0828 222 Pfam Ras family 16 172 IPR001806 GO:0003924|GO:0005525
Sto5g0828 222 ProSiteProfiles small GTPase Ras family profile. 6 222 IPR001806 GO:0003924|GO:0005525
Sto5g0828 222 SMART ras_sub_4 12 175 - -
Sto5g0828 222 Gene3D - 4 220 IPR027417 -
Sto5g0828 222 CDD Ran 15 180 - -
Sto5g0828 222 TIGRFAM small_GTP: small GTP-binding protein domain 15 165 IPR005225 GO:0005525
Sto5g0828 222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 196 IPR027417 -
Sto5g0828 222 SMART rab_sub_5 15 175 - -
Sto5g0828 222 MobiDBLite consensus disorder prediction 200 222 - -
Sto5g0828 222 PANTHER RAN GTPASE 3 222 IPR002041 GO:0003924|GO:0005525|GO:0006913
Sto5g0828 222 SMART rho_sub_3 17 171 IPR001806 GO:0003924|GO:0005525
Sto5g0828 222 ProSiteProfiles small GTPase Rab1 family profile. 9 211 - -
Sto5g0828 222 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 28 42 IPR002041 GO:0003924|GO:0005525|GO:0006913
Sto5g0828 222 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 169 191 IPR002041 GO:0003924|GO:0005525|GO:0006913
Sto5g0828 222 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 75 93 IPR002041 GO:0003924|GO:0005525|GO:0006913
Sto5g0828 222 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 95 116 IPR002041 GO:0003924|GO:0005525|GO:0006913
Sto5g0828 222 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 131 149 IPR002041 GO:0003924|GO:0005525|GO:0006913
Sto5g0828 222 SMART ran_sub_2 20 221 - -
Sto5g0828 222 PANTHER GTP-BINDING NUCLEAR PROTEIN 3 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0828 Sto-Chr5 5588148 5590473 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0828 K07936 - mnt:21389070 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0828 5 5588148 5590473 Sto5g0828 5 5588148 5590473 ECH