Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0797 ATGCTTCTCCGTAACCCTCGTCATATCCTCTTTTCTCTTCGTTTTCTGCTGCTAAGGCCAAATCTTGGAGTTCCAAATCGACGTTTCTTCTCTTCCAAATCTATCATCCATTGGCCCTCACTACCATTCCCACCACGCATCGCGAACCCGAACCCGCTTTCAGTGAATGCGGACTCTAACTTCTCACGGGATGACTTCTCTACCATCGCCAATCTCTTCATCGACCCTTCCATCTCTCCCGGTCCAGCCCTGGTTACTGCACTCGACCGGACTGGAATTGAGCCGGATCCCGCTCTGATTCAAGCTATATTCGATCATTTCGATTCTTCCCCCAAGTTGCTACACTCGCTGTTTCTTTGGGCTCAGAAGCGACCTGGGTTCACACCCACCGTGACGCTCTTCAACTCAATGATCAAAGTTCTTGCCAAATCAAGGGAGTTTGACTCTGCGTGGATTTTGCTTCTTGATAGGGCTGACAGACACGAGGATGACACCTTCGTTTCTAGGGATACCTTTGCTATTATGATCAGACGGTATGCTGCTGCAGGTATGCCCCAACCTGCAATTCGGACGTTTGAGTATGCTAACAATTTAAAGTCATTTATGGATTCTGATTCAGAAACGACTTTATTTGAGATATTGTTGGATTCACTTTGTAAAGAAGGGTCTGTAAGGGCAGCTTCAGAGTATTTCCTCCAGAGAAAGAAGATGGATTCGTGTTGGGTTCCATCAACTCGGGTTTATAATATTATGCTAAATGGATGGTTCCGAGCAAGGAAGCTCAAACATGCTGAGAGAGTTTGggcagagatgaagaaggagaatGTAAAACCAAGTGTTGTGACTTATGGTACCCTTGTGGAAGGATATTGCCGGATGAATCGTATTGAAAAAGCACTTGAAATGGTTGGTGATATGACCAAAAATGGAATTGAACCGAACGCAATTGTCTATAATCCTATAATTGACGCATTGGCAGAGGCTAGGAGATTCAAAGAGGCTTTAGGGATGTTGGAGCGCTTTCTTGTTTTAGAAACAGGTCCCACAAACTATACTTACAACTCTTTGGTGAAAGGTTTTTGTAAGGCAGGAGATCTTGATGGTGCCAGTGAGATCCTTAAGAAGATGATAAGTAGGGGTTTCGTCCCTTGTTCCACCACCTATAACTATTTTTTCAGGTACTTTTCAAGATGTGGGAAAATTGAGGAGGGTATGAACCTTTATATCAAGATGATCAAATCTGGTTATACCCCTGATCGGCTTACCTACCATCTTTTGGTGAAGATGTTATGTGAAGAGGAGAGGTTGGACTTGGCGGTTCAAGTCAGTAAGGAAATGAGGCAAAAGGGATATGACATGGACTTAGCAACAAGTACTATGTTGATTCATTTGCTTTGCAAAATGCATAGGTTGGAAGAGGCTTTTGTGGAGTTTGAGGACATGATACGCAGGGGTATAGTTCCTCAGTATCTCACATTTCAGAGAATGAATGGTGAACTAAAGAAACAAGGGATGATTGAAATGGCGCGGAAATTATGCAGCTTGATGTCTTCTGTCCCTCATCCTACTAACTTGCCAAACACGTATGTTGAAGACATAGATGGAGCACACGCAAGGAGACAATCTATAATGCGGAAAGCCAAAGTATTTTCTGATATGCTGAAGAACTGTAAGGACCCCATAGAACTTGCCAAGTATAGAAGTTCGTCAGAAAATGCTGTCTTAAGTGCAAACTGTTTGATAGAGAATATTAAGAAAAGGATAAATAAGACATGA 1776 0.4245 MLLRNPRHILFSLRFLLLRPNLGVPNRRFFSSKSIIHWPSLPFPPRIANPNPLSVNADSNFSRDDFSTIANLFIDPSISPGPALVTALDRTGIEPDPALIQAIFDHFDSSPKLLHSLFLWAQKRPGFTPTVTLFNSMIKVLAKSREFDSAWILLLDRADRHEDDTFVSRDTFAIMIRRYAAAGMPQPAIRTFEYANNLKSFMDSDSETTLFEILLDSLCKEGSVRAASEYFLQRKKMDSCWVPSTRVYNIMLNGWFRARKLKHAERVWAEMKKENVKPSVVTYGTLVEGYCRMNRIEKALEMVGDMTKNGIEPNAIVYNPIIDALAEARRFKEALGMLERFLVLETGPTNYTYNSLVKGFCKAGDLDGASEILKKMISRGFVPCSTTYNYFFRYFSRCGKIEEGMNLYIKMIKSGYTPDRLTYHLLVKMLCEEERLDLAVQVSKEMRQKGYDMDLATSTMLIHLLCKMHRLEEAFVEFEDMIRRGIVPQYLTFQRMNGELKKQGMIEMARKLCSLMSSVPHPTNLPNTYVEDIDGAHARRQSIMRKAKVFSDMLKNCKDPIELAKYRSSSENAVLSANCLIENIKKRINKT 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0797 591 Pfam PPR repeat 134 154 IPR002885 -
Sto5g0797 591 Pfam PPR repeat 317 340 IPR002885 -
Sto5g0797 591 Pfam PPR repeat 457 486 IPR002885 -
Sto5g0797 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Sto5g0797 591 Pfam PPR repeat family 243 292 IPR002885 -
Sto5g0797 591 Pfam PPR repeat family 383 431 IPR002885 -
Sto5g0797 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Sto5g0797 591 TIGRFAM PPR: pentatricopeptide repeat domain 247 280 IPR002885 -
Sto5g0797 591 TIGRFAM PPR: pentatricopeptide repeat domain 387 419 IPR002885 -
Sto5g0797 591 TIGRFAM PPR: pentatricopeptide repeat domain 316 340 IPR002885 -
Sto5g0797 591 TIGRFAM PPR: pentatricopeptide repeat domain 422 454 IPR002885 -
Sto5g0797 591 TIGRFAM PPR: pentatricopeptide repeat domain 281 315 IPR002885 -
Sto5g0797 591 TIGRFAM PPR: pentatricopeptide repeat domain 351 383 IPR002885 -
Sto5g0797 591 TIGRFAM PPR: pentatricopeptide repeat domain 459 488 IPR002885 -
Sto5g0797 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Sto5g0797 591 Pfam PPR repeat 348 376 IPR002885 -
Sto5g0797 591 Gene3D Tetratricopeptide repeat domain 98 231 IPR011990 GO:0005515
Sto5g0797 591 Gene3D Tetratricopeptide repeat domain 232 306 IPR011990 GO:0005515
Sto5g0797 591 Gene3D Tetratricopeptide repeat domain 307 377 IPR011990 GO:0005515
Sto5g0797 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
Sto5g0797 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Sto5g0797 591 Coils Coil 581 591 - -
Sto5g0797 591 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 78 588 - -
Sto5g0797 591 SUPERFAMILY HCP-like 242 426 - -
Sto5g0797 591 Gene3D Tetratricopeptide repeat domain 378 559 IPR011990 GO:0005515
Sto5g0797 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Sto5g0797 591 PANTHER LEAF PROTEIN-LIKE 78 588 - -
Sto5g0797 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0797 171 535 Glycosyltransferase AT1G05670 24.317 2.77e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0797 - - gmx:100793484 806.979